Molecular dynamics simulations of forced unbending of integrin α(v)β₃.
pmid: 21379327
pmc: PMC3040657
Molecular dynamics simulations of forced unbending of integrin α(v)β₃.
Integrins may undergo large conformational changes during activation, but the dynamic processes and pathways remain poorly understood. We used molecular dynamics to simulate forced unbending of a complete integrin α(v)β₃ ectodomain in both unliganded and liganded forms. Pulling the head of the integrin readily induced changes in the integrin from a bent to an extended conformation. Pulling at a cyclic RGD ligand bound to the integrin head also extended the integrin, suggesting that force can activate integrins. Interactions at the interfaces between the hybrid and β tail domains and between the hybrid and epidermal growth factor 4 domains formed the major energy barrier along the unbending pathway, which could be overcome spontaneously in ~1 µs to yield a partially-extended conformation that tended to rebend. By comparison, a fully-extended conformation was stable. A newly-formed coordination between the α(v) Asp457 and the α-genu metal ion might contribute to the stability of the fully-extended conformation. These results reveal the dynamic processes and pathways of integrin conformational changes with atomic details and provide new insights into the structural mechanisms of integrin activation.
- Georgia Institute of Technology United States
QH301-705.5, Protein Conformation, Protein Stability, Humans, Biology (General), Molecular Dynamics Simulation, Integrin alphaVbeta3, Oligopeptides, Protein Binding, Protein Structure, Tertiary
QH301-705.5, Protein Conformation, Protein Stability, Humans, Biology (General), Molecular Dynamics Simulation, Integrin alphaVbeta3, Oligopeptides, Protein Binding, Protein Structure, Tertiary
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