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Phenylalanine biosynthesis in Arabidopsis thaliana. Identification and characterization of arogenate dehydratases.

Authors: Cho, Man-Ho; Corea, Oliver R A; Yang, Hong; Bedgar, Diana L; Laskar, Dhrubojyoti D; Anterola, Aldwin M; Moog-Anterola, Frances Anne; +6 Authors

Phenylalanine biosynthesis in Arabidopsis thaliana. Identification and characterization of arogenate dehydratases.

Abstract

There is much uncertainty as to whether plants use arogenate, phenylpyruvate, or both as obligatory intermediates in Phe biosynthesis, an essential dietary amino acid for humans. This is because both prephenate and arogenate have been reported to undergo decarboxylative dehydration in plants via the action of either arogenate (ADT) or prephenate (PDT) dehydratases; however, neither enzyme(s) nor encoding gene(s) have been isolated and/or functionally characterized. An in silico data mining approach was thus undertaken to attempt to identify the dehydratase(s) involved in Phe formation in Arabidopsis, based on sequence similarity of PDT-like and ACT-like domains in bacteria. This data mining approach suggested that there are six PDT-like homologues in Arabidopsis, whose phylogenetic analyses separated them into three distinct subgroups. All six genes were cloned and subsequently established to be expressed in all tissues examined. Each was then expressed as a Nus fusion recombinant protein in Escherichia coli, with their substrate specificities measured in vitro. Three of the resulting recombinant proteins, encoded by ADT1 (At1g11790), ADT2 (At3g07630), and ADT6 (At1g08250), more efficiently utilized arogenate than prephenate, whereas the remaining three, ADT3 (At2g27820), ADT4 (At3g44720), and ADT5 (At5g22630) essentially only employed arogenate. ADT1, ADT2, and ADT6 had k(cat)/Km values of 1050, 7650, and 1560 M(-1) S(-1) for arogenate versus 38, 240, and 16 M(-1) S(-1) for prephenate, respectively. By contrast, the remaining three, ADT3, ADT4, and ADT5, had k(cat)/Km values of 1140, 490, and 620 M(-1) S(-1), with prephenate not serving as a substrate unless excess recombinant protein (>150 microg/assay) was used. All six genes, and their corresponding proteins, are thus provisionally classified as arogenate dehydratases and designated ADT1-ADT6.

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Keywords

Cyclohexenes - metabolism, Tyrosine - metabolism, Cyclohexanecarboxylic Acids, Arabidopsis Proteins - metabolism, Arabidopsis, Arabidopsis - enzymology, Sequence Homology, Gene Expression, Phenylalanine - biosynthesis, Phenylalanine - chemistry, Substrate Specificity, Recombinant Proteins - metabolism, Amino Acids, Cloning, Molecular, Prephenate Dehydratase - metabolism, Tertiary - physiology, Phylogeny, Hydro-Lyases - metabolism, Recombinant Proteins - chemistry, Prephenate Dehydratase, Recombinant Proteins, Amino Acids, Dicarboxylic, Amino Acid, Escherichia coli - enzymology, Arabidopsis Proteins - chemistry, Arabidopsis Proteins - genetics, Dicarboxylic - chemistry, Sequence Analysis, Escherichia coli - genetics, Hydro-Lyases - chemistry, Protein Structure, 570, Phenylalanine, Cyclohexenes - chemistry, Dicarboxylic - metabolism, Tyrosine - analogs & derivatives, Substrate Specificity - physiology, Cyclohexanecarboxylic Acids - metabolism, Cyclohexanecarboxylic Acids - chemistry, Cyclohexenes, Escherichia coli, Humans, Hydro-Lyases, Arabidopsis - genetics, Sequence Homology, Amino Acid, Arabidopsis Proteins, Hydro-Lyases - genetics, Molecular, DNA, Sequence Analysis, DNA, Protein Structure, Tertiary, Recombinant Proteins - genetics, Kinetics, Tyrosine - chemistry, Prephenate Dehydratase - chemistry, Tyrosine, Prephenate Dehydratase - genetics, Cloning

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
109
Top 10%
Top 10%
Top 10%
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