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The EMBO Journal
Article . 2012

Genome-wide siRNA screen reveals amino acid starvation-induced autophagy requires SCOC and WAC.

Authors: Nicole C, McKnight; Harold B J, Jefferies; Endalkachew A, Alemu; Rebecca E, Saunders; Michael, Howell; Terje, Johansen; Sharon A, Tooze;

Genome-wide siRNA screen reveals amino acid starvation-induced autophagy requires SCOC and WAC.

Abstract

Autophagy is a catabolic process by which cytoplasmic components are sequestered and transported by autophagosomes to lysosomes for degradation, enabling recycling of these components and providing cells with amino acids during starvation. It is a highly regulated process and its deregulation contributes to multiple diseases. Despite its importance in cell homeostasis, autophagy is not fully understood. To find new proteins that modulate starvation-induced autophagy, we performed a genome-wide siRNA screen in a stable human cell line expressing GFP-LC3, the marker-protein for autophagosomes. Using stringent validation criteria, our screen identified nine novel autophagy regulators. Among the hits required for autophagosome formation are SCOC (short coiled-coil protein), a Golgi protein, which interacts with fasciculation and elongation protein zeta 1 (FEZ1), an ULK1-binding protein. SCOC forms a starvation-sensitive trimeric complex with UVRAG (UV radiation resistance associated gene) and FEZ1 and may regulate ULK1 and Beclin 1 complex activities. A second candidate WAC is required for starvation-induced autophagy but also acts as a potential negative regulator of the ubiquitin-proteasome system. The identification of these novel regulatory proteins with diverse functions in autophagy contributes towards a fuller understanding of autophagosome formation.

Related Organizations
Keywords

Staining and Labeling, Recombinant Fusion Proteins, Green Fluorescent Proteins, Membrane Proteins, Nuclear Proteins, RNA-Binding Proteins, Cell Line, Genes, Reporter, Phagosomes, Autophagy, Humans, Gene Silencing, Amino Acids, RNA, Small Interfering, Carrier Proteins

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
105
Top 10%
Top 10%
Top 1%
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