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ATP-Independent Cooperative Binding of Yeast Isw1a to Bare and Nucleosomal DNA

Authors: de Cian, Anne; Praly, Elise; Ding, Fangyuan; Singh, Vijender; Lavelle, Christophe; Le Cam, Eric; Croquette, Vincent; +2 Authors

ATP-Independent Cooperative Binding of Yeast Isw1a to Bare and Nucleosomal DNA

Abstract

Among chromatin remodeling factors, the ISWI family displays a nucleosome-enhanced ATPase activity coupled to DNA translocation. While these enzymes are known to bind to DNA, their activity has not been fully characterized. Here we use TEM imaging and single molecule manipulation to investigate the interaction between DNA and yeast Isw1a. We show that Isw1a displays a highly cooperative ATP-independent binding to and bridging between DNA segments. Under appropriate tension, rare single nucleation events can sometimes be observed and loop DNA with a regular step. These nucleation events are often followed by binding of successive complexes bridging between nearby DNA segments in a zipper-like fashion, as confirmed by TEM observations. On nucleosomal substrates, we show that the specific ATP-dependent remodeling activity occurs in the context of cooperative Isw1a complexes bridging extranucleosomal DNA. Our results are interpreted in the context of the recently published partial structure of Isw1a and support its acting as a "protein ruler" (with possibly more than one tick).

Keywords

Adenosine Triphosphatases, 570, Saccharomyces cerevisiae Proteins, [SDV]Life Sciences [q-bio], Science, Q, R, Saccharomyces cerevisiae, 540, Nucleosomes, Substrate Specificity, [SDV] Life Sciences [q-bio], DNA-Binding Proteins, Adenosine Triphosphate, Microscopy, Electron, Transmission, Medicine, DNA, Fungal, Research Article, Protein Binding

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    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
8
Average
Average
Average
Green
gold