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PubMed Central
Other literature type . 2023
Data sources: PubMed Central
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Journal of Trace Elements in Medicine and Biology
Article . 2023 . Peer-reviewed
License: Elsevier TDM
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UnissResearch
Article . 2022
Data sources: UnissResearch
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Structural modeling of protein ensembles between E3 RING ligases and SARS-CoV-2: The role of zinc binding domains

Authors: Chasapis, Christos; Perlepes, Spyros P.; Bjørklund, Geir; Peana, Massimiliano;

Structural modeling of protein ensembles between E3 RING ligases and SARS-CoV-2: The role of zinc binding domains

Abstract

The ubiquitin system is a modification process with many different cellular functions including immune signaling and antiviral functions. E3 ubiquitin ligases are enzymes that recruit an E2 ubiquitin-conjugating enzyme bound to ubiquitin in order to catalyze the transfer of ubiquitin from the E2 to a protein substrate. The RING E3s, the most abundant type of ubiquitin ligases, are characterized by a zinc (II)-binding domain called RING (Really Interesting New Gene). Viral replication requires modifying and hijacking key cellular pathways within host cells such as cellular ubiquitination. There are well-established examples where a viral proteins bind to RING E3s, redirecting them to degrade otherwise long-lived host proteins or inhibiting E3's ubiquitination activity. Recently, three binary interactions between SARS-CoV-2 proteins and innate human immune signaling Ε3 RING ligases: NSP15-RNF41, ORF3a-TRIM59 and NSP9-MIB1 have been experimentally established.In this work, we have investigated the mode of the previous experimentally supported NSP15-RNF41, ORF3a,-TRIM59 and NSP9-MIB1 binary interactions by in silico methodologies intending to provide structural insights of E3-virus interplay that can help identify potential inhibitors that could block SARS-CoV-2 infection of immune cells.In silico methodologies have shown that the above human E3 ligases interact with viral partners through their Zn(II) binding domains. This RING mediated formation of stable SARS-CoV-2-E3 complexes indicates a critical structural role of RING domains in immune system disruption by SARS-CoV-2-infection.The data used to support the findings of this research are included within the article and are labeled with references.

Keywords

Βιοχημεία, SARS-CoV-2, Ubiquitin, Ubiquitin-Protein Ligases, Immunology, Intracellular Signaling Peptides and Proteins, COVID-19, Zinc binding RING domains, E3 RING ligases, E3 RING ligases, SARS-CoV-2, Zinc binding, RING domains, Haddock, Biochemistry, Δομική Βιολογία, Article, Tripartite Motif Proteins, Zinc, Chemical engineering, Structural Biology, Ανοσολογία, Humans, Χημική μηχανική, Haddock

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average
Green