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Comprehensive fitness maps of Hsp90 show widespread environmental dependence

Authors: Julia M Flynn; Ammeret Rossouw; Pamela Cote-Hammarlof; Inês Fragata; David Mavor; Carl Hollins; Claudia Bank; +1 Authors

Comprehensive fitness maps of Hsp90 show widespread environmental dependence

Abstract

Gene-environment interactions have long been theorized to influence molecular evolution. However, the environmental dependence of most mutations remains unknown. Using deep mutational scanning, we engineered yeast with all 44,604 single codon changes encoding 14,160 amino acid variants in Hsp90 and quantified growth effects under standard conditions and under five stress conditions. To our knowledge, these are the largest determined comprehensive fitness maps of point mutants. The growth of many variants differed between conditions, indicating that environment can have a large impact on Hsp90 evolution. Multiple variants provided growth advantages under individual conditions; however, these variants tended to exhibit growth defects in other environments. The diversity of Hsp90 sequences observed in extant eukaryotes preferentially contains variants that supported robust growth under all tested conditions. Rather than favoring substitutions in individual conditions, the long-term selective pressure on Hsp90 may have been that of fluctuating environments, leading to robustness under a variety of conditions.

Countries
United States, Switzerland
Keywords

Models, Molecular, Saccharomyces cerevisiae Proteins, QH301-705.5, Protein Conformation, Science, Ecology and Evolutionary Biology, S. cerevisiae, Hsp90, Saccharomyces cerevisiae, deep mutational scanning, fitness map, Stress, Physiological, Gene Expression Regulation, Fungal, genomics, genetics, HSP90 Heat-Shock Proteins, Amino Acids, Biology (General), Evolutionary Biology, evolutionary biology, Q, and Proteins, Fungi, R, Genetics and Genomics, Epistasis, Genetic, Adaptation, Physiological, Mutation, 570 Life sciences; biology, Medicine, Gene-Environment Interaction, Genetic Fitness, Genetic Phenomena, Peptides

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
64
Top 1%
Top 10%
Top 10%
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gold