Characterization of the transcriptional signature of C/EBPbeta isoforms (LAP/LIP) in Hep3B cells: Implication of LIP in pro-survival functions
pmid: 21145827
Characterization of the transcriptional signature of C/EBPbeta isoforms (LAP/LIP) in Hep3B cells: Implication of LIP in pro-survival functions
C/EBPbeta is an important mediator of several cellular processes, such as differentiation, proliferation, and survival of hepatic cells. However, a complete catalog of the targets of C/EBPbeta or the mechanism by which this transcription factor regulates certain liver-dependent pathways has not been clearly determined. Two major natural isoforms of this transcription factor exist: the liver-enriched activating protein (LAP) and the liver-enriched inhibitory protein (LIP), a functional LAP antagonist. In this study, we used the opposing transcriptional effects driven by LAP and LIP to determine the genuine C/EBPbeta molecular signature in the Hep3B human hepatoma cell line. We subsequently investigated the role of each of the LAP and LIP isoforms in drug-induced Hep3B cell death.We engineered Hep3B cells with regulated LAP or LIP expression using the Tet-off expression system. The genes that showed inverse regulation by LAP and LIP were identified by cDNA array analysis. The cohort of direct-C/EBPbeta-targets was distinguished from indirect-targets by ChIP-on-chip analysis.We characterized 676 genes by this approach. Among these genes, 39 are novel direct targets of C/EBPbeta. Eleven of these new direct targets are involved in cell survival, suggesting critical roles for LAP/LIP isoforms in this cellular process. Therefore, we examined the effects of LAP and LIP over-expression on cell survival. We show that LIP promotes survival in staurosporine- or taxol-induced Hep3B cell death.Our study provides new molecular and cellular insights into the role of C/EBPbeta in cells of hepatic origin.
- Grenoble Alpes University France
- Institut de Recherche Interdisciplinaire de Grenoble France
- Inserm France
- University of Paris France
- UNIVERSITE PARIS DESCARTES France
Carcinoma, Hepatocellular, Cell Death, Paclitaxel, Transcription, Genetic, Cell Survival, CCAAT-Enhancer-Binding Protein-beta, Gene Expression Profiling, Liver Neoplasms, Staurosporine, Models, Biological, [SDV] Life Sciences [q-bio], Cell Line, Tumor, Humans, Protein Isoforms, Genetic Engineering, Cell Proliferation, Oligonucleotide Array Sequence Analysis
Carcinoma, Hepatocellular, Cell Death, Paclitaxel, Transcription, Genetic, Cell Survival, CCAAT-Enhancer-Binding Protein-beta, Gene Expression Profiling, Liver Neoplasms, Staurosporine, Models, Biological, [SDV] Life Sciences [q-bio], Cell Line, Tumor, Humans, Protein Isoforms, Genetic Engineering, Cell Proliferation, Oligonucleotide Array Sequence Analysis
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