Pseudouridine formation in archaeal RNAs: The case ofHaloferax volcanii
Pseudouridine formation in archaeal RNAs: The case ofHaloferax volcanii
Pseudouridine (Ψ), the isomer of uridine, is commonly found at various positions of noncoding RNAs of all organisms. Ψ residues are formed by a number of single- or multisite specific Ψ synthases, which generally act as stand-alone proteins. In addition, in Eukarya and Archaea, specific ribonucleoprotein complexes, each containing a distinct box H/ACA guide RNA and four core proteins, can produce Ψ at many sites of different cellular RNAs. Cbf5 is the core Ψ synthase in these complexes. UsingHaloferax volcaniias an archaeal model organism, we show that, contrary to eukaryotes, the Cbf5 homolog (HVO_2493) is not essential in this archaeon. The Cbf5-deleted strain ofH. volcaniicompletely lacks Ψ at positions 1940, 1942, 2605, and 2591 (Escherichia colipositions 1915, 1917, 2572, and 2586) of its 23S rRNA, and contains reduced steady-state levels of some box H/ACA RNAs. Archaeal Cbf5 is known to have tRNA Ψ55 synthase activity in vitro but we could not confirm this activity in vivo inH. volcanii. Conversely, the Pus10 (previously PsuX) homolog (HVO_1979), which can produce tRNA Ψ55, as well as Ψ54 in vitro, is shown here to be essential inH. volcanii, whereas the corresponding tRNA Ψ55 synthases, Pus4 and TruB, are not essential in yeast and E. coli, respectively. Finally, we demonstrate that HVO_1852, the TruA/Pus3 homolog, is responsible for the pseudouridylation of position 39 inH. volcaniitRNAs and that the corresponding gene is not essential.
- University of Florida United States
- Paris 13 University France
- French National Centre for Scientific Research France
- Southern Illinois University Carbondale United States
- Southern Illinois University System United States
Base Sequence, Organisms, Genetically Modified, Molecular Sequence Data, RNA, Archaeal, Models, Biological, Amino Acyl-tRNA Synthetases, Nucleic Acid Conformation, Haloferax volcanii, Intramolecular Transferases, Gene Deletion, Hydro-Lyases, Pseudouridine
Base Sequence, Organisms, Genetically Modified, Molecular Sequence Data, RNA, Archaeal, Models, Biological, Amino Acyl-tRNA Synthetases, Nucleic Acid Conformation, Haloferax volcanii, Intramolecular Transferases, Gene Deletion, Hydro-Lyases, Pseudouridine
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