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Genome Biology and Evolution
Article . 2024 . Peer-reviewed
License: CC BY
Data sources: Crossref
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https://dx.doi.org/10.5167/uzh...
Other literature type . 2024
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Unveiling the Genome-Wide Consequences of Range Expansion and Mating System Transitions in Primula vulgaris

Authors: Mora-Carrera, Emiliano; Stubbs, Rebecca L; Potente, Giacomo; Yousefi, Narjes; Aeschbacher, Simon; Keller, Barbara; Choudhury, Rimjhim Roy; +5 Authors

Unveiling the Genome-Wide Consequences of Range Expansion and Mating System Transitions in Primula vulgaris

Abstract

Abstract Genetic diversity is heterogeneously distributed among populations of the same species, due to the joint effects of multiple demographic processes, including range contractions and expansions, and mating systems shifts. Here, we ask how both processes shape genomic diversity in space and time in the classical Primula vulgaris model. This perennial herb originated in the Caucasus region and was hypothesized to have expanded westward following glacial retreat in the Quaternary. Moreover, this species is a long-standing model for mating system transitions, exemplified by shifts from heterostyly to homostyly. Leveraging a high-quality reference genome of the closely related Primula veris and whole-genome resequencing data from both heterostylous and homostylous individuals from populations encompassing a wide distribution of P. vulgaris, we reconstructed the demographic history of P. vulgaris. Results are compatible with the previously proposed hypothesis of range expansion from the Caucasus region approximately 79,000 years ago and suggest later shifts to homostyly following rather than preceding postglacial colonization of England. Furthermore, in accordance with population genetic theoretical predictions, both processes are associated with reduced genetic diversity, increased linkage disequilibrium, and reduced efficacy of purifying selection. A novel result concerns the contrasting effects of range expansion versus shift to homostyly on transposable elements, for the former, process is associated with changes in transposable element genomic content, while the latter is not. Jointly, our results elucidate how the interactions among range expansion, transitions to selfing, and Quaternary climatic oscillations shape plant evolution.

Countries
Switzerland, Turkey
Keywords

10127 Institute of Evolutionary Biology and Environmental Studies, 10121 Department of Systematic and Evolutionary Botany, Primula, range expansions; genomic selfing syndrome; mating system transitions; heterostyly; homostyly; quaternary glaciations, Reproduction, 570 Life sciences; biology, 590 Animals (Zoology), Genetic Variation, 2700 General Medicine, Article, Genome, Plant, Linkage Disequilibrium

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
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