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Biophysical Journal
Article
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Biophysical Journal
Article . 2009
License: Elsevier Non-Commercial
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Biophysical Journal
Article . 2009 . Peer-reviewed
License: Elsevier Non-Commercial
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Measurement Of The Protein Friction Between The Yeast Kinesin-8 Kip3p And Microtubules

Authors: Bormuth, Volker; Varga, Vladimir; Howard, Jonathon; Schäffer, Erik;

Measurement Of The Protein Friction Between The Yeast Kinesin-8 Kip3p And Microtubules

Abstract

Several proteins have been shown to undergo 'one-dimensional' diffusion along the surface of microtubules. Diffusion is thought to enhance the rate of targeting of proteins to the microtubule end for the depolymerizing kinesin-13 and the polymerase XMAP215, or to increase the processivity of kinesin-1 and dynein. According to the Einstein-Smolukowski relation, the diffusion coefficient, D, is related to the friction coefficient, gamma, according to D = kT/gamma. This relation, however, has not been experimentally tested for individual bio-molecules. We measured both the diffusional and frictional properties of single yeast kinesin-8 motor proteins, Kip3p, interacting with microtubule filaments in the ADP state. Using single molecule fluorescence we found that that the diffusion coefficient was 5400±1400 nm2/s with an average lifetime on the microtubule lattice of 8 s. Using an optical trap to drag a microsphere coated with Kip3p along microtubules, we measured a single molecule drag coefficient of 790±230 nNs/m at low speeds. Thus we verified the Einstein-Smolukowski relation. For larger speeds and drag forces, we measured a non-linear force-velocity relation which was well fit by a model in which Kip3p is diffusing in a periodic potential with an 8-nm periodicity and a barrier height between binding sites of 14±2 kT. This finding of an 8-nm periodicity is supported by an analysis of the positional fluctuations. Our measurements are a step towards resolving the molecular mechanism underlying protein friction an important parameter for active protein locomotion limiting the efficiency.

Keywords

Biophysics

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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