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Journal of Molecular Biology
Article . 2014 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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The Histone H4 Tail Regulates the Conformation of the ATP-Binding Pocket in the SNF2h Chromatin Remodeling Enzyme

Authors: Racki, Lisa R; Naber, Nariman; Pate, Ed; Leonard, John D; Cooke, Roger; Narlikar, Geeta J;

The Histone H4 Tail Regulates the Conformation of the ATP-Binding Pocket in the SNF2h Chromatin Remodeling Enzyme

Abstract

The chromatin remodeling complex ACF helps establish the appropriate nucleosome spacing for generating repressed chromatin states. ACF activity is stimulated by two defining features of the nucleosomal substrate: a basic patch on the histone H4 N-terminal tail and the specific length of flanking DNA. However, the mechanisms by which these two substrate cues function in the ACF remodeling reaction is not well understood. Using electron paramagnetic resonance spectroscopy with spin-labeled ATP analogs to probe the structure of the ATP active site under physiological solution conditions, we identify a closed state of the ATP-binding pocket that correlates with ATPase activity. We find that the H4 tail promotes pocket closure. We further show that ATPase stimulation by the H4 tail does not require a specific structure connecting the H4 tail and the globular domain. In the case of many DNA helicases, closure of the ATP-binding pocket is regulated by specific DNA substrates. Pocket closure by the H4 tail may analogously provide a mechanism to directly couple substrate recognition to activity. Surprisingly, the flanking DNA, which also stimulates ATP hydrolysis, does not promote pocket closure, suggesting that the H4 tail and flanking DNA may be recognized in different reaction steps.

Keywords

Protein Structure, Biochemistry & Molecular Biology, Chromosomal Proteins, Non-Histone, Protein Conformation, 1.1 Normal biological development and functioning, human hACF, basic patch, Molecular Sequence Data, Spodoptera, Microbiology, Histones, Medicinal and Biomolecular Chemistry, spin-labeled nucleotide, Adenosine Triphosphate, Underpinning research, Sf9 Cells, Animals, Humans, Amino Acid Sequence, Adenosine Triphosphatases, Binding Sites, nucleosome, Non-Histone, Biological Sciences, Chromatin Assembly and Disassembly, Protein Structure, Tertiary, Chromosomal Proteins, Biochemistry and cell biology, Biochemistry and Cell Biology, Tertiary, EPR spectroscopy, Protein Binding

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
31
Top 10%
Top 10%
Top 10%
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bronze