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Proceedings of the National Academy of Sciences
Article . 2012 . Peer-reviewed
Data sources: Crossref
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Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling

Authors: Middleton, A. M.; Ubeda-Tomas, S.; Griffiths, J.; Holman, T.; Hedden, P.; Thomas, S. G.; Phillips, A. L.; +4 Authors

Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling

Abstract

The hormone gibberellin (GA) is a key regulator of plant growth. Many of the components of the gibberellin signal transduction [e.g., GIBBERELLIN INSENSITIVE DWARF 1 (GID1) and DELLA], biosynthesis [e.g., GA 20-oxidase (GA20ox) and GA3ox], and deactivation pathways have been identified. Gibberellin binds its receptor, GID1, to form a complex that mediates the degradation of DELLA proteins. In this way, gibberellin relieves DELLA-dependent growth repression. However, gibberellin regulates expression of GID1 , GA20ox , and GA3ox , and there is also evidence that it regulates DELLA expression. In this paper, we use integrated mathematical modeling and experiments to understand how these feedback loops interact to control gibberellin signaling. Model simulations are in good agreement with in vitro data on the signal transduction and biosynthesis pathways and in vivo data on the expression levels of gibberellin-responsive genes. We find that GA–GID1 interactions are characterized by two timescales (because of a lid on GID1 that can open and close slowly relative to GA–GID1 binding and dissociation). Furthermore, the model accurately predicts the response to exogenous gibberellin after a number of chemical and genetic perturbations. Finally, we investigate the role of the various feedback loops in gibberellin signaling. We find that regulation of GA20ox transcription plays a significant role in both modulating the level of endogenous gibberellin and generating overshoots after the removal of exogenous gibberellin. Moreover, although the contribution of other individual feedback loops seems relatively small, GID1 and DELLA transcriptional regulation acts synergistically with GA20ox feedback.

Keywords

Feedback, Physiological, Models, Genetic, Transcription, Genetic, Arabidopsis Proteins, Reverse Transcriptase Polymerase Chain Reaction, Arabidopsis, Receptors, Cell Surface, Gibberellins, Mixed Function Oxygenases, Plant Growth Regulators, Gene Expression Regulation, Plant, Algorithms, Signal Transduction

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
126
Top 1%
Top 10%
Top 1%
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