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Proceedings of the National Academy of Sciences
Article . 2014 . Peer-reviewed
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Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics

Authors: Nicholas F, Dupuis; Erik D, Holmstrom; David J, Nesbitt;

Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics

Abstract

Significance The cell cytoplasm is a multicomponent solution that is much more concentrated than typically sampled in conventional in vitro studies. The presence of cosolutes can strongly influence biomolecular folding due to “molecular-crowding” effects, which are poorly understood and yet crucial to understand. In this study, the thermodynamics/kinetics of “crowding” effects are probed at the single-molecule level for an isolated RNA tertiary interaction. We observe dramatic stabilization of the folded state and, for the first time (to our knowledge), establish the kinetic origin of molecular crowding to be dominated by entropic acceleration of folding.

Keywords

Protein Folding, RNA Folding, Microscopy, Confocal, Base Sequence, Entropy, Proteins, Carbocyanines, Solutions, Kinetics, Fluorescence Resonance Energy Transfer, Nucleic Acid Conformation, RNA, Thermodynamics, Fluorescent Dyes

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
144
Top 1%
Top 10%
Top 10%
bronze