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Characterization of the Melanoma miRNAome by Deep Sequencing

Authors: Stark, Mitchell S.; Tyagi, Sonika; Nancarrow, Derek J.; Boyle, Glen M.; Cook, Anthony L.; Whiteman, David C.; Parsons, Peter G.; +3 Authors

Characterization of the Melanoma miRNAome by Deep Sequencing

Abstract

MicroRNAs (miRNAs) are 18-23 nucleotide non-coding RNAs that regulate gene expression in a sequence specific manner. Little is known about the repertoire and function of miRNAs in melanoma or the melanocytic lineage. We therefore undertook a comprehensive analysis of the miRNAome in a diverse range of pigment cells including: melanoblasts, melanocytes, congenital nevocytes, acral, mucosal, cutaneous and uveal melanoma cells.We sequenced 12 small RNA libraries using Illumina's Genome Analyzer II platform. This massively parallel sequencing approach of a diverse set of melanoma and pigment cell libraries revealed a total of 539 known mature and mature-star sequences, along with the prediction of 279 novel miRNA candidates, of which 109 were common to 2 or more libraries and 3 were present in all libraries.Some of the novel candidate miRNAs may be specific to the melanocytic lineage and as such could be used as biomarkers to assist in the early detection of distant metastases by measuring the circulating levels in blood. Follow up studies of the functional roles of these pigment cell miRNAs and the identification of the targets should shed further light on the development and progression of melanoma.

Keywords

RNA, Untranslated, Skin Neoplasms, 1300 Biochemistry, Tumor invasion, Science, Proliferation, Expression, Genetics and Molecular Biology, Metastasis, Malignant-melanoma, 1100 Agricultural and Biological Sciences, Cluster Analysis, Humans, Neoplasm Metastasis, Melanoma, Breast-cancer, Gene Library, Genome, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, RNA, Q, R, MicroRNAs, 2700 Medicine, Tumorigenesis, Disease Progression, Cell lines, Medicine, Melanocytes, Research Article

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
186
Top 10%
Top 10%
Top 1%
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gold
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