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Molecular and Cellular Biology
Article . 2005 . Peer-reviewed
License: ASM Journals Non-Commercial TDM
Data sources: Crossref
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Identification of a Conserved RNA Motif Essential for She2p Recognition and mRNA Localization to the Yeast Bud

Authors: Catherine, Olivier; Guillaume, Poirier; Patrick, Gendron; Anita, Boisgontier; François, Major; Pascal, Chartrand;

Identification of a Conserved RNA Motif Essential for She2p Recognition and mRNA Localization to the Yeast Bud

Abstract

In Saccharomyces cerevisiae, over twenty mRNAs localize to the bud tip of daughter cells, playing roles in processes as different as mating type switching and plasma membrane targeting. The localization of these transcripts depends on interactions between a cis-acting localization element(s) or zipcodes and the RNA-binding protein She2p. While previous studies identified four different localization elements in the bud-localized ASH1 mRNA, the main determinants for She2p recognition are still unknown. To investigate the RNA-binding specificity of She2p, we isolated She2p-binding RNAs by in vivo selection from libraries of partially randomized ASH1 localization elements. The RNAs isolated contained a similar loop-stem-loop structure with a highly conserved CGA triplet in one loop and a single conserved cytosine in the other loop. Mutating these conserved nucleotides or the stem separating them resulted in the loss of She2p binding and in the delocalization of a reporter mRNA. Using this information, we identified the same RNA motif in two other known bud-localized transcripts, suggesting that this motif is conserved among bud-localized mRNAs. These results show that mRNAs with zipcodes lacking primary sequence similarity can rely on a few conserved nucleotides properly oriented in their three-dimensional structure in order to be recognized by the same localization machinery.

Related Organizations
Keywords

Saccharomyces cerevisiae Proteins, Base Sequence, Molecular Sequence Data, Mutation, Nucleic Acid Conformation, RNA-Binding Proteins, RNA, Fungal, RNA, Messenger, Saccharomyces cerevisiae, Conserved Sequence

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
82
Top 10%
Top 10%
Top 10%
bronze