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Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1

Authors: Guillaume Gaullier; Genevieve Roberts; Uma M. Muthurajan; Samuel Bowerman; Johannes Rudolph; Jyothi Mahadevan; Asmita Jha; +2 Authors

Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1

Abstract

AbstractPoly(ADP-ribose) Polymerase 2 (PARP2) is one of three DNA-dependent PARPs involved in the detection of DNA damage. Upon binding to DNA double-strand breaks, PARP2 uses nicotinamide adenine dinucleotide to synthesize poly(ADP-ribose) (PAR) onto itself and other proteins, including histones. PAR chains in turn promote the DNA damage response by recruiting downstream repair factors. These early steps of DNA damage signaling are relevant for understanding how genome integrity is maintained and how their failure leads to genome instability or cancer. There is no structural information on DNA double-strand break detection in the context of chromatin. Here we present a cryo-EM structure of two nucleosomes bridged by human PARP2 and confirm that PARP2 bridges DNA ends in the context of nucleosomes bearing short linker DNA. We demonstrate that the conformation of PARP2 bound to damaged chromatin provides a binding platform for the regulatory protein Histone PARylation Factor 1 (HPF1), and that the resulting HPF1•PARP2•nucleosome complex is enzymatically active. Our results contribute to a structural view of the early steps of the DNA damage response in chromatin.

Keywords

Models, Molecular, Cellbiologi, Protein Conformation, Science, In Vitro Techniques, Biochemistry, Humans, Point Mutation, DNA Breaks, Double-Stranded, Biokemi, Molecular Biology, Molekylärbiologi, Q, Cryoelectron Microscopy, Biochemistry and Molecular Biology, R, Nuclear Proteins, Cell Biology, Recombinant Proteins, Nucleosomes, Amino Acid Substitution, Medicine, Mutant Proteins, Poly(ADP-ribose) Polymerases, Carrier Proteins, Biokemi och molekylärbiologi, Research Article, Protein Binding

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    Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
44
Top 10%
Top 10%
Top 10%
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