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Biophysical Journal
Article
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Biophysical Journal
Article . 2015
License: Elsevier Non-Commercial
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Biophysical Journal
Article . 2015 . Peer-reviewed
License: Elsevier Non-Commercial
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Towards the Simulation of a Complete ATP Synthase: Unravelling the Structural Basis of the Enzyme's Reversible Action

Authors: Singharoy, Abhishek; Schulten, Klaus;

Towards the Simulation of a Complete ATP Synthase: Unravelling the Structural Basis of the Enzyme's Reversible Action

Abstract

The most prominent bioenergetic macromolecuar-motor in all life forms is ATP synthase that transforms an ion gradient existing across the cell membrane into the synthesis of ATP from ADP. Even with a wealth of available biochemical and structural information derived from numerous past and ongoing experiments, the exact mechanism of ATP synthase function remains unknown. Recently, crystallographers provided the first high-resolution view of ATP activity in Enterococcus hirae V1-ATPase. Employing a suite of transition path sampling methods, the sequence of conformational transitions involved in a functional cycle accompanying ATP hydrolysis have been investigated. The simulation suggests ADP unbinding is followed by ATP uptake which, in turn, leads to the torque generation step, i.e., rotation of the center stalk. The trajectory yields multiple intermediates, a couple of which have been isolated in independent crystallography experiments. The simulation further infers, in agreement with single-molecule experiments, that ATP binding is not the torque generation step. Finally, using data from four different high-resolution PDB structures a complete model of ATP synthase has been constructed. An evaluation of the elastic energy stored in the different ATP synthase subunits provides a structural basis for the reversible action of the synthase.

Keywords

Biophysics

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
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Average
Average
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