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Functional Genomic Analysis of RNA Interference in C. elegans

Authors: John K, Kim; Harrison W, Gabel; Ravi S, Kamath; Muneesh, Tewari; Amy, Pasquinelli; Jean-François, Rual; Scott, Kennedy; +5 Authors

Functional Genomic Analysis of RNA Interference in C. elegans

Abstract

RNA interference (RNAi) of target genes is triggered by double-stranded RNAs (dsRNAs) processed by conserved nucleases and accessory factors. To identify the genetic components required for RNAi, we performed a genome-wide screen using an engineered RNAi sensor strain of Caenorhabditis elegans . The RNAi screen identified 90 genes. These included Piwi/PAZ proteins, DEAH helicases, RNA binding/processing factors, chromatin-associated factors, DNA recombination proteins, nuclear import/export factors, and 11 known components of the RNAi machinery. We demonstrate that some of these genes are also required for germline and somatic transgene silencing. Moreover, the physical interactions among these potential RNAi factors suggest links to other RNA-dependent gene regulatory pathways.

Keywords

Genome, Amino Acid Motifs, Genomics, Protein Structure, Tertiary, Protein Interaction Mapping, RNA Precursors, Animals, RNA Interference, Gene Silencing, Transgenes, RNA, Helminth, Caenorhabditis elegans, Caenorhabditis elegans Proteins, Genes, Helminth, Gene Library, RNA, Double-Stranded

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Powered by OpenAIRE graph
citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
253
Top 1%
Top 1%
Top 1%