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Protein Science
Article
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Protein Science
Article . 2014 . Peer-reviewed
License: Wiley Online Library User Agreement
Data sources: Crossref
Protein Science
Article . 2015
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Only a subset of the PAB1‐mRNP proteome is present in mRNA translation complexes

Authors: Zhang, Chongxu; Wang, Xin; Park, Shiwha; Chiang, Yueh-chin; Xi, Wen; Laue, Thomas M.; Denis, Clyde L.;

Only a subset of the PAB1‐mRNP proteome is present in mRNA translation complexes

Abstract

AbstractWe have previously identified 55 nonribosomal proteins in PAB1‐mRNP complexes in Saccharomyces cerevisiae using mass spectrometric analysis. Because one of the inherent limitations of mass spectrometry is that it does not inform as to the size or type of complexes in which the proteins are present, we consequently used analytical ultracentrifugation with fluorescent detection system (AU‐FDS) to determine which proteins are present in the 77S monosomal translation complex that contains minimally the closed‐loop structure components (eIF4E, eIF4G, and PAB1), mRNA, and the 40S and 60S ribosomes. We assayed by AU‐FDS analysis 33 additional PAB1‐mRNP factors but found that only five of these proteins were present in the 77S translation complex: eRF1, SLF1, SSD1, PUB1, and SBP1. eRF1 is involved in translation termination, SBP1 is a translational repressor, and SLF1, SSD1, and PUB1 are known mRNA binding proteins. Many of the known P body/stress granule proteins that associate with the PAB1‐mRNP were not present in the 77S translation complex, implying that P body/stress granules result from significant protein additions after translational cessation. These data inform that AU‐FDS can clarify protein complex identification that remains undetermined after typical immunoprecipitation and mass spectrometric analyses.

Country
United States
Related Organizations
Keywords

Saccharomyces cerevisiae Proteins, Proteome, Ribonucleoproteins, Protein Biosynthesis, RNA, Messenger, Saccharomyces cerevisiae, Poly(A)-Binding Proteins

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    18
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    Top 10%
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    Top 10%
Powered by OpenAIRE graph
citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
18
Top 10%
Average
Top 10%
bronze