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Proceedings of the National Academy of Sciences
Article . 2002 . Peer-reviewed
Data sources: Crossref
https://doi.org/10.1142/978981...
Part of book or chapter of book . 2018 . Peer-reviewed
Data sources: Crossref
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Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution

Authors: Martin, Egli; George, Minasov; Li, Su; Alexander, Rich;

Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution

Abstract

Many pathogenic viruses use programmed −1 ribosomal frameshifting to regulate translation of their structural and enzymatic proteins from polycistronic mRNAs. Frameshifting is commonly stimulated by a pseudoknot located downstream from a slippery sequence, the latter positioned at the ribosomal A and P sites. We report here the structures of two crystal forms of the frameshifting RNA pseudoknot from beet western yellow virus at resolutions of 1.25 and 2.85 Å. Because of the very high resolution of 1.25 Å, ten mono- and divalent metal ions per asymmetric unit could be identified, giving insight into potential roles of metal ions in stabilizing the pseudoknot. A magnesium ion located at the junction of the two pseudoknot stems appears to play a crucial role in stabilizing the structure. Because the two crystal forms exhibit mostly unrelated packing interactions and local crystallographic disorder in the high-resolution form was resolvable, the two structures offer the most detailed view yet of the conformational preference and flexibility of an RNA pseudoknot.

Related Organizations
Keywords

Luteovirus, Potassium, Nucleic Acid Conformation, RNA, Viral, Magnesium, Crystallization, Ribosomes

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    114
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Powered by OpenAIRE graph
citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
114
Top 10%
Top 10%
Top 10%
bronze