AbstractSignaling pathways controlling vasculogenesis, angiogenesis, and myelopoiesis are still poorly understood, in part because not all genes important for vasculature or myeloid cell formation have been characterized. To identify novel potential regulators of vasculature and myeloid cell formation we performed microarray analysis of zebrafish embryos that overexpress Ets1‐related protein (Etsrp/Etv2/ER71), sufficient to induce vasculogenesis and myelopoiesis (Sumanas and Lin [] Development 121:3141–3150; Lee [] Cell Stem Cell 2:497–507; Sumanas et al. [] Blood 111:4500–4510). We performed sequence homology and expression analysis for up‐regulated genes that were novel or previously unassociated with the zebrafish vasculature formation. Angiotensin II type 2 receptor (agtr2), src homology 2 domain containing E (she), mannose receptor C1 (mrc1), endothelial cell‐specific adhesion molecule (esam), yes‐related kinase (yrk/fyn), zinc finger protein, multitype 2b (zfpm2b/fog2b), and stabilin 2 (stab2) were specifically expressed in vascular endothelial cells during early development while keratin18 expression was localized to the myeloid cells. Identification of vasculature and myeloid‐specific genes will be important for dissecting molecular mechanisms of vasculogenesis/angiogenesis and myelopoiesis. Developmental Dynamics 238:1836–1850, 2009. © 2009 Wiley‐Liss, Inc.