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Emerging Microbes and Infections
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Emerging Microbes and Infections
Article
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Emerging Microbes and Infections
Article . 2020 . Peer-reviewed
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PubMed Central
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Emerging Microbes and Infections
Article . 2020
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ZENODO
Article . 2020
Data sources: Datacite
ZENODO
Article . 2020
Data sources: Datacite
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Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan

Authors: Zheng Zhu; Shuofeng Yuan; Shuofeng Yuan; Jasper Fuk-Woo Chan; Hin Chu; Hin Chu; Kin-Hang Kok; +3 Authors

Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan

Abstract

(Uploaded by Plazi for the Bat Literature Project) A mysterious outbreak of atypical pneumonia in late 2019 was traced to a seafood wholesale market in Wuhan of China. Within a few weeks, a novel coronavirus tentatively named as 2019 novel coronavirus (2019-nCoV) was announced by the World Health Organization. We performed bioinformatics analysis on a virus genome from a patient with 2019-nCoV infection and compared it with other related coronavirus genomes. Overall, the genome of 2019-nCoV has 89% nucleotide identity with bat SARS-like-CoVZXC21 and 82% with that of human SARS-CoV. The phylogenetic trees of their orf1a/b, Spike, Envelope, Membrane and Nucleoprotein also clustered closely with those of the bat, civet and human SARS coronaviruses. However, the external subdomain of Spike's receptor binding domain of 2019-nCoV shares only 40% amino acid identity with other SARS-related coronaviruses. Remarkably, its orf3b encodes a completely novel short protein. Furthermore, its new orf8 likely encodes a secreted protein with an alpha-helix, following with a beta-sheet(s) containing six strands. Learning from the roles of civet in SARS and camel in MERS, hunting for the animal source of 2019-nCoV and its more ancestral virus would be important for understanding the origin and evolution of this novel lineage B betacoronavirus. These findings provide the basis for starting further studies on the pathogenesis, and optimizing the design of diagnostic, antiviral and vaccination strategies for this emerging infection.

Related Organizations
Keywords

Wuhan, China, Epidemiology, Pneumonia, Viral, Immunology, bats, bat, Infectious and parasitic diseases, RC109-216, Genome, Viral, Microbiology, Betacoronavirus, Viral Proteins, Sequence Analysis, Protein, Chiroptera, Virology, Drug Discovery, Humans, Animalia, Amino Acid Sequence, Chordata, genome, Phylogeny, SARS, Travel, genome ; COVID-19 ; respiratory ; SARS-CoV ; SARS ; Wuhan ; emerging ; virus ; bioinformatics ; Coronavirus, SARS-CoV-2, emerging, COVID-19, Articles, Biodiversity, General Medicine, respiratory, QR1-502, Coronavirus, Infectious Diseases, Mammalia, Parasitology, Coronavirus Infections

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2K
Top 0.01%
Top 0.01%
Top 0.01%
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