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Dioxygenases without Requirement for Cofactors and Their Chemical Model Reaction: Compulsory Order Ternary Complex Mechanism of 1H-3-Hydroxy-4-oxoquinaldine 2,4-Dioxygenase Involving General Base Catalysis by Histidine 251 and Single-Electron Oxidation of the Substrate Dianion

Authors: Ursula, Frerichs-Deeken; Kalina, Ranguelova; Reinhard, Kappl; Jürgen, Hüttermann; Susanne, Fetzner;

Dioxygenases without Requirement for Cofactors and Their Chemical Model Reaction: Compulsory Order Ternary Complex Mechanism of 1H-3-Hydroxy-4-oxoquinaldine 2,4-Dioxygenase Involving General Base Catalysis by Histidine 251 and Single-Electron Oxidation of the Substrate Dianion

Abstract

1H-3-Hydroxy-4-oxoquinaldine 2,4-dioxygenase (Hod) is a cofactor-less dioxygenase belonging to the alpha/beta hydrolase fold family, catalyzing the cleavage of 1H-3-hydroxy-4-oxoquinaldine (I) and 1H-3-hydroxy-4-oxoquinoline (II) to N-acetyl- and N-formylanthranilate, respectively, and carbon monoxide. Bisubstrate steady-state kinetics and product inhibition patterns of HodC, the C69A protein variant of Hod, suggested a compulsory-order ternary-complex mechanism, in which binding of the organic substrate precedes dioxygen binding, and carbon monoxide is released first. The specificity constants, k(cat)/K(m,A) and k(cat)/K(m,O)()2, were 1.4 x 10(8) and 3.0 x 10(5) M(-1) s(-1) with I and 1.2 x 10(5) and 0.41 x 10(5) M(-1) s(-1) with II, respectively. Whereas HodC catalyzes formation of the dianion of its organic substrate prior to dioxygen binding, HodC-H251A does not, suggesting that H251, which aligns with the histidine of the catalytic triad of the alpha/beta hydrolases, acts as general base in catalysis. Investigation of base-catalyzed dioxygenolysis of I by electron paramagnetic resonance (EPR) spectroscopy revealed formation of a resonance-stabilized radical upon exposure to dioxygen. Since in D(2)O spectral properties are not affected, exchangeable protons are not involved, confirming that the dianion is the reactive intermediate that undergoes single-electron oxidation. We suggest that in the ternary complex of the enzyme, direct single-electron transfer from the substrate dianion to dioxygen may occur, resulting in a radical pair. Based on the estimated spin distribution within the radical anion (observed in the model reaction of I), radical recombination may produce a C4- or C2-hydroperoxy(di)anion. Subsequent intramolecular attack would result in the 2,4-endoperoxy (di)anion that may collapse to the reaction products.

Keywords

Alanine, Binding Sites, Escherichia coli Proteins, Electron Spin Resonance Spectroscopy, Electrons, Hydrogen Peroxide, Quinaldines, Hydrogen-Ion Concentration, Catalysis, Dioxygenases, Enzyme Activation, Oxygen, Kinetics, Bacterial Proteins, Models, Chemical, Mutagenesis, Site-Directed, Histidine, Anaerobiosis, Arthrobacter, Oxidation-Reduction

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
62
Top 10%
Top 10%
Top 10%