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Amino Acids
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Amino Acids
Article . 2016 . Peer-reviewed
License: Springer TDM
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Amino Acids
Article . 2017
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Mapping surface residues of eIF5A that are important for binding to the ribosome using alanine scanning mutagenesis

Authors: Barbosa, Natália M.; Boldrin, Paulo E. G.; Rossi, Danuza; Yamamoto, Priscila A.; Watanabe, Tatiana F.; Serrão, Vitor H.; Hershey, John W. B.; +3 Authors

Mapping surface residues of eIF5A that are important for binding to the ribosome using alanine scanning mutagenesis

Abstract

The translation elongation factor eIF5A is conserved through evolution and is necessary to rescue the ribosome during translation elongation of polyproline-containing proteins. Although the site of eIF5A binding to the ribosome is known, no systematic analysis has been performed so far to determine the important residues on the surface of eIF5A required for ribosome binding. In this study, we used clustered charged-to-alanine mutagenesis and structural modeling to address this question. We generated four new mutants of yeast eIF5A: tif51A-4, tif51A-6, tif51A-7 and tif51A-11, and complementation analysis revealed that tif51A-4 and tif51A-7 could not sustain cell growth in a strain lacking wild-type eIF5A. Moreover, the allele tif51A-4 also displayed negative dominance over wild-type eIF5A. Both in vivo GST-pulldowns and in vitro fluorescence anisotropy demonstrated that eIF5A from mutant tif51A-7 exhibited an importantly reduced affinity for the ribosome, implicating the charged residues in cluster 7 as determinant features on the eIF5A surface for contacting the ribosome. Notably, modified eIF5A from mutant tif51A-4, despite exhibiting the most severe growth phenotype, did not abolish ribosome interactions as with mutant tif51A-7. Taking into account the modeling eIF5A + 80S + P-tRNA complex, our data suggest that interactions of eIF5A with ribosomal protein L1 are more important to stabilize the interaction with the ribosome as a whole than the contacts with P-tRNA. Finally, the ability of eIF5A from tif51A-4 to bind to the ribosome while potentially blocking physical interaction with P-tRNA could explain its dominant negative phenotype.

Keywords

Ribosomal Proteins, 570, Biochemistry & Molecular Biology, Saccharomyces cerevisiae Proteins, Translation elongation, Saccharomyces cerevisiae, Medical Biochemistry and Metabolomics, Medicinal and Biomolecular Chemistry, Hypusine, Peptide Initiation Factors, Genetics, Medicinal and biomolecular chemistry, Medical biochemistry and metabolomics, eIF5A, Biomedical and Clinical Sciences, 500, RNA-Binding Proteins, Eukaryotic Translation Initiation Factor 5A, Ribosome binding, Mutagenesis, Chemical Sciences, Generic health relevance, Ribosomes, Protein Binding

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
4
Average
Average
Average
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gold