Seventy-five genetic loci influencing the human red blood cell
Seventy-five genetic loci influencing the human red blood cell
Anaemia is a chief determinant of global ill health, contributing to cognitive impairment, growth retardation and impaired physical capacity. To understand further the genetic factors influencing red blood cells, we carried out a genome-wide association study of haemoglobin concentration and related parameters in up to 135,367 individuals. Here we identify 75 independent genetic loci associated with one or more red blood cell phenotypes at P < 10(-8), which together explain 4-9% of the phenotypic variance per trait. Using expression quantitative trait loci and bioinformatic strategies, we identify 121 candidate genes enriched in functions relevant to red blood cell biology. The candidate genes are expressed preferentially in red blood cell precursors, and 43 have haematopoietic phenotypes in Mus musculus or Drosophila melanogaster. Through open-chromatin and coding-variant analyses we identify potential causal genetic variants at 41 loci. Our findings provide extensive new insights into genetic mechanisms and biological pathways controlling red blood cell formation and function.
- University of Iceland Iceland
- Cleveland Clinic United States
- Imperial College London United Kingdom
- University of Southern California United States
- University of Glasgow United Kingdom
Netherlands Twin Register (NTR), Male, Erythrocytes, PROTEIN, DISEASE, Hemoglobins, Mice, Genetics; Genomics, blood, Genomewide association, Cell Cycle, COMMON VARIANTS, anemia, DROSOPHILA, HEMOGLOBIN LEVELS, Drosophila melanogaster, Phenotype, Genomics, blood, Organ Specificity, Cytokines, Female, RNA Interference, TRAITS, Signal Transduction, EXPRESSION, 570, 610, Polymorphism, Single Nucleotide, SDG 3 - Good Health and Well-being, Genetic, Animals, Humans, IGMD 3: Genomic disorders and inherited multi-system disorders DCN MP - Plasticity and memory, GENOME-WIDE ASSOCIATION, Common Variants, RECEPTOR, CONSORTIUM, hemoglobin, ta3121, Hematopoiesis, Hemoglobin Levels, meta-analysis, Gene Expression Regulation, Genetic Loci, 1000 General, genome-wide association studies, Genome-Wide Association Study
Netherlands Twin Register (NTR), Male, Erythrocytes, PROTEIN, DISEASE, Hemoglobins, Mice, Genetics; Genomics, blood, Genomewide association, Cell Cycle, COMMON VARIANTS, anemia, DROSOPHILA, HEMOGLOBIN LEVELS, Drosophila melanogaster, Phenotype, Genomics, blood, Organ Specificity, Cytokines, Female, RNA Interference, TRAITS, Signal Transduction, EXPRESSION, 570, 610, Polymorphism, Single Nucleotide, SDG 3 - Good Health and Well-being, Genetic, Animals, Humans, IGMD 3: Genomic disorders and inherited multi-system disorders DCN MP - Plasticity and memory, GENOME-WIDE ASSOCIATION, Common Variants, RECEPTOR, CONSORTIUM, hemoglobin, ta3121, Hematopoiesis, Hemoglobin Levels, meta-analysis, Gene Expression Regulation, Genetic Loci, 1000 General, genome-wide association studies, Genome-Wide Association Study
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