Diversity and Evolution of the Envelope Gene of Dengue Virus Type 1
pmid: 12482662
Diversity and Evolution of the Envelope Gene of Dengue Virus Type 1
The genetic diversity and phylogenetic relationships of a collection of strains of dengue virus type 1 (DV-1), isolated from different parts of the world, were investigated. Phylogenetic trees derived from the complete sequence of the E gene of 44 strains suggested the existence of five genetic types defined by a maximum nucleotide divergence within each group of 6%. The 22 strains from America were classified into a single genetic type that included strains associated either with classical dengue or hemorrhagic dengue episodes. Using a maximum likelihood procedure based on a single rate with dated tips model and substitution rates calculated at the third codon position, evolution of the five DV-1 genotypes was shown to conform to a molecular clock. The average rate of evolution was estimated to be approximately 16.2 x 10(-4) substitutions/third codon position site/year. Using this estimate, divergence among the DV-1 genotypes was calculated to have occurred approximately 100 years ago. Very low average value of the ratio of nonsynonymous-to-synonymous nucleotide substitutions, relative to the respective sites (0.046), indicated that the evolution of the E gene of the DV-1 is subject mostly to purifying selection.
- Instituto Venezolano de Investigaciones Científicas Venezuela
- University of Carabobo Venezuela
- Rafael Advanced Defense Systems (Israel) Israel
Time Factors, Genotype, Molecular Sequence Data, envelope, Global Health, molecular epidemiology, Dengue, Evolution, Molecular, Viral Envelope Proteins, Virology, Humans, Phylogeny, Molecular Epidemiology, dengue virus, molecular evolution, molecular clock, Genetic Variation, genetic diversity, Dengue Virus, dengue, nucleotide substitutions, RNA, Viral, Sequence Analysis
Time Factors, Genotype, Molecular Sequence Data, envelope, Global Health, molecular epidemiology, Dengue, Evolution, Molecular, Viral Envelope Proteins, Virology, Humans, Phylogeny, Molecular Epidemiology, dengue virus, molecular evolution, molecular clock, Genetic Variation, genetic diversity, Dengue Virus, dengue, nucleotide substitutions, RNA, Viral, Sequence Analysis
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