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Bioinformatics
Article . 2022 . Peer-reviewed
License: CC BY NC
Data sources: Crossref
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Bioinformatics
Article . 2022
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PubMed Central
Other literature type . 2022
License: CC BY NC
Data sources: PubMed Central
DBLP
Article
Data sources: DBLP
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RNAloops: a database of RNA multiloops

Authors: Jakub Wiedemann; Jacek Kaczor; Maciej Milostan; Tomasz Zok; Jacek Blazewicz; Marta Szachniuk; Maciej Antczak;
Abstract

AbstractMotivationKnowledge of the 3D structure of RNA supports discovering its functions and is crucial for designing drugs and modern therapeutic solutions. Thus, much attention is devoted to experimental determination and computational prediction targeting the global fold of RNA and its local substructures. The latter include multi-branched loops—functionally significant elements that highly affect the spatial shape of the entire molecule. Unfortunately, their computational modeling constitutes a weak point of structural bioinformatics. A remedy for this is in collecting these motifs and analyzing their features.ResultsRNAloops is a self-updating database that stores multi-branched loops identified in the PDB-deposited RNA structures. A description of each loop includes angular data—planar and Euler angles computed between pairs of adjacent helices to allow studying their mutual arrangement in space. The system enables search and analysis of multiloops, presents their structure details numerically and visually, and computes data statistics.Availability and implementationRNAloops is freely accessible at https://rnaloops.cs.put.poznan.pl.Supplementary informationSupplementary data are available at Bioinformatics online.

Keywords

Databases, Factual, Sequence Analysis, RNA, RNA, Nucleic Acid Conformation, Original Papers, Software

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
12
Top 10%
Average
Top 10%
Green
gold