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Molecular & Cellular Proteomics
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Molecular & Cellular Proteomics
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Proteomics of the Chloroplast Envelope Membranes from Arabidopsis thaliana

Authors: Ferro, Myriam; Salvi, Daniel; Brugière, Sabine; Miras, Stéphane; Kowalski, Solène; Louwagie, Mathilde; Garin, Jérôme; +2 Authors

Proteomics of the Chloroplast Envelope Membranes from Arabidopsis thaliana

Abstract

The development of chloroplasts and the integration of their function within a plant cell rely on the presence of a complex biochemical machinery located within their limiting envelope membranes. To provide the most exhaustive view of the protein repertoire of chloroplast envelope membranes, we analyzed this membrane system using proteomics. To this purpose, we first developed a procedure to prepare highly purified envelope membranes from Arabidopsis chloroplasts. We then extracted envelope proteins using different methods, i.e. chloroform/methanol extraction and alkaline or saline treatments, in order to retrieve as many proteins as possible, from the most to least hydrophobic ones. Liquid chromatography tandem mass spectrometry analyses were then performed on each envelope membrane subfraction, leading to the identification of more than 100 proteins. About 80% of the identified proteins are known to be, or are very likely, located in the chloroplast envelope. The validation of localization in the envelope of two phosphate transporters exemplifies the need for a combination of strategies to perform the most exhaustive identification of genuine chloroplast envelope proteins. Interestingly, some of the identified proteins are found to be Nalpha-acetylated, which indicates the accurate location of the N terminus of the corresponding mature protein. With regard to function, more than 50% of the identified proteins have functions known or very likely to be associated with the chloroplast envelope. These proteins are a) involved in ion and metabolite transport, b) components of the protein import machinery, and c) involved in chloroplast lipid metabolism. Some soluble proteins, like proteases, proteins involved in carbon metabolism, or proteins involved in responses to oxidative stress, were associated with envelope membranes. Almost one-third of the proteins we identified have no known function. The present work helps understanding chloroplast envelope metabolism at the molecular level and provides a new overview of the biochemical machinery of the chloroplast envelope membranes.

Keywords

Proteomics, 570, Chloroplasts, [SDV]Life Sciences [q-bio], Recombinant Fusion Proteins, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Sequence Data, Arabidopsis, MESH: Amino Acid Sequence, MESH: Arabidopsis Proteins, Chloroplast, MESH: Recombinant Fusion Proteins, [SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology, MESH: Arabidopsis, Amino Acid Sequence, Molecular Biology, Protein import, 580, MESH: Chloroplasts, MESH: Molecular Sequence Data, MESH: Peptides, Subcellular localization, Arabidopsis Proteins, MESH: Proteomics, Membrane Proteins, Intracellular Membranes, [SDV] Life Sciences [q-bio], MESH: Intracellular Membranes, Transporters, Chloroplast envelope, MESH: Subcellular Fractions, MESH: Membrane Proteins, Peptides, Subcellular Fractions

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    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
394
Top 1%
Top 1%
Top 1%
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