Tolerance of the archaeal Sac7d scaffold protein to alternative library designs: characterization of anti-immunoglobulin G Affitins
pmid: 23315487
Tolerance of the archaeal Sac7d scaffold protein to alternative library designs: characterization of anti-immunoglobulin G Affitins
Engineered protein scaffolds have received considerable attention as alternatives to antibodies in both basic and applied research, as they can offer superior biophysical properties often associated with a simpler molecular organization. Sac7d has been demonstrated as an effective scaffold for molecular recognition. Here, we used the initial L1 'flat surface' library constructed by randomization of 14 residues, to identify ligands specific for human immunoglobulin G. To challenge the plasticity of the Sac7d protein scaffold, we designed the alternative L2 'flat surface & loops' library whereof only 10 residues are randomized. Representative binders (Affitins) of the two libraries exhibited affinities in the low nanomolar range and were able to recognize different epitopes within human immunoglobulin G. These Affitins were stable up to pH 12 while largely conserving other favorable properties of Sac7d protein, such as high expression yields in Escherichia coli, solubility, thermal stability up to 80.7°C, and acidic stability (pH 0). In agreement with our library designs, mutagenesis study revealed two distinct binding areas, one including loops. Together, our results indicate that the Sac7d scaffold tolerates alternative library designs, which further expands the diversity of Affitins and may provide a general way to create tailored affinity tools for demanding applications.
- Inserm France
- University of Nantes France
- University of Nantes France
- University of Paris France
- French National Centre for Scientific Research France
570, MESH: Epitopes, [SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], [PHYS.PHYS.PHYS-BIO-PH]Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph], Archaeal Proteins, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, 610, [SDV.BC]Life Sciences [q-bio]/Cellular Biology, Ligands, Protein Engineering, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Epitopes, Peptide Library, MESH: Protein Stability, MESH: Ligands, [CHIM.CRIS]Chemical Sciences/Cristallography, [SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology, Humans, [CHIM.CRIS] Chemical Sciences/Cristallography, Molecular Biology, [SDV.BC] Life Sciences [q-bio]/Cellular Biology, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM], MESH: Immunoglobulin G, MESH: Humans, [PHYS.PHYS.PHYS-BIO-PH] Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph], Molecular Biology/Structural Biology [q-bio.BM], Protein Stability, MESH: Antibodies, MESH: Archaeal Proteins, Archaea, Antibodies, Anti-Idiotypic, Protein Structure, Tertiary, MESH: Protein Engineering, DNA-Binding Proteins, MESH: Protein Structure, Anti-Idiotypic, MESH: Archaea, Immunoglobulin G, MESH: Peptide Library, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], MESH: Ribosomes, Ribosomes, Tertiary, MESH: DNA-Binding Proteins
570, MESH: Epitopes, [SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], [PHYS.PHYS.PHYS-BIO-PH]Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph], Archaeal Proteins, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, 610, [SDV.BC]Life Sciences [q-bio]/Cellular Biology, Ligands, Protein Engineering, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Epitopes, Peptide Library, MESH: Protein Stability, MESH: Ligands, [CHIM.CRIS]Chemical Sciences/Cristallography, [SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology, Humans, [CHIM.CRIS] Chemical Sciences/Cristallography, Molecular Biology, [SDV.BC] Life Sciences [q-bio]/Cellular Biology, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM], MESH: Immunoglobulin G, MESH: Humans, [PHYS.PHYS.PHYS-BIO-PH] Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph], Molecular Biology/Structural Biology [q-bio.BM], Protein Stability, MESH: Antibodies, MESH: Archaeal Proteins, Archaea, Antibodies, Anti-Idiotypic, Protein Structure, Tertiary, MESH: Protein Engineering, DNA-Binding Proteins, MESH: Protein Structure, Anti-Idiotypic, MESH: Archaea, Immunoglobulin G, MESH: Peptide Library, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], MESH: Ribosomes, Ribosomes, Tertiary, MESH: DNA-Binding Proteins
3 Research products, page 1 of 1
- 2010IsSupplementTo
- 2010IsRelatedTo
- 2017IsRelatedTo
citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).42 popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Top 10% influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Top 10% impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Top 10%
