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eLife
Article . 2018 . Peer-reviewed
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eLife
Article
License: CC BY
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eLife
Article . 2019
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PubMed Central
Other literature type . 2018
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eLife
Article . 2018
Data sources: DOAJ
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3.3-Å resolution cryo-EM structure of human ribonucleotide reductase with substrate and allosteric regulators bound

Authors: Edward J Brignole; Kuang-Lei Tsai; Johnathan Chittuluru; Haoran Li; Yimon Aye; Pawel A Penczek; JoAnne Stubbe; +2 Authors

3.3-Å resolution cryo-EM structure of human ribonucleotide reductase with substrate and allosteric regulators bound

Abstract

Ribonucleotide reductases (RNRs) convert ribonucleotides into deoxyribonucleotides, a reaction essential for DNA replication and repair. Human RNR requires two subunits for activity, the α subunit contains the active site, and the β subunit houses the radical cofactor. Here, we present a 3.3-Å resolution structure by cryo-electron microscopy (EM) of a dATP-inhibited state of human RNR. This structure, which was determined in the presence of substrate CDP and allosteric regulators ATP and dATP, has three α2 units arranged in an α6 ring. At near-atomic resolution, these data provide insight into the molecular basis for CDP recognition by allosteric specificity effectors dATP/ATP. Additionally, we present lower-resolution EM structures of human α6 in the presence of both the anticancer drug clofarabine triphosphate and β2. Together, these structures support a model for RNR inhibition in which β2 is excluded from binding in a radical transfer competent position when α exists as a stable hexamer.

Keywords

Models, Molecular, nucleic acid metabolism, QH301-705.5, Protein Conformation, Science, Cytidine Diphosphate, Adenosine Triphosphate, Allosteric Regulation, Biochemistry and Chemical Biology, Ribonucleotide Reductases, Humans, radical mechanism, protein structure, Biology (General), Q, Cryoelectron Microscopy, R, chemotherapeutic target, allosteric regulation, Medicine, Protein Multimerization, single-particle electron microscopy, Protein Binding

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
41
Top 10%
Top 10%
Top 10%
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