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Journal of Integrative Plant Biology
Article . 2012 . Peer-reviewed
License: Wiley Online Library User Agreement
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Gene Network Analysis and Functional Studies of Senescence‐associated Genes Reveal Novel Regulators of Arabidopsis Leaf SenescenceF

Authors: Zhonghai, Li; Jinying, Peng; Xing, Wen; Hongwei, Guo;

Gene Network Analysis and Functional Studies of Senescence‐associated Genes Reveal Novel Regulators of Arabidopsis Leaf SenescenceF

Abstract

AbstractPlant leaf senescence has been recognized as the last phase of plant development, a highly ordered process regulated by genes known as senescence associated genes (SAGs). However, the function of most of SAGs in regulating leaf senescence as well as regulators of those functionally known SAGs are still unclear. We have previously developed a curated database of genes potentially associated with leaf senescence, the Leaf Senescence Database (LSD). In this study, we built gene networks to identify common regulators of leaf senescence in Arabidopsis thaliana using promoting or delaying senescence genes in LSD. Our results demonstrated that plant hormones cytokinin, auxin, nitric oxide as well as small molecules, such as Ca2+, delay leaf senescence. By contrast, ethylene, ABA, SA and JA as well as small molecules, such as oxygen, promote leaf senescence, altogether supporting the idea that phytohormones play a critical role in regulating leaf senescence. Functional analysis of candidate SAGs in LSD revealed that a WRKY transcription factor WRKY75 and a Cys2/His2–type transcription factor AZF2 are positive regulators of leaf senescence and loss‐of‐function of WRKY75 or AZF2 delayed leaf senescence. We also found that silencing of a protein phosphatase, AtMKP2, promoted early senescence. Collectively, LSD can serve as a comprehensive resource for systematic study of the molecular mechanism of leaf senescence as well as offer candidate genes for functional analyses.

Related Organizations
Keywords

DNA-Binding Proteins, Plant Leaves, Arabidopsis Proteins, Arabidopsis, Gene Regulatory Networks, Darkness, Protein Tyrosine Phosphatases, Genes, Plant, Transcription Factors

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
150
Top 1%
Top 10%
Top 10%
bronze