A Pooled shRNA Screen Identifies Rbm15, Spen, and Wtap as Factors Required for Xist RNA-Mediated Silencing
A Pooled shRNA Screen Identifies Rbm15, Spen, and Wtap as Factors Required for Xist RNA-Mediated Silencing
X-chromosome inactivation is the process that evolved in mammals to equalize levels of X-linked gene expression in XX females relative to XY males. Silencing of a single X chromosome in female cells is mediated by the non-coding RNA Xist. Although progress has been made toward identifying factors that function in the maintenance of X inactivation, the primary silencing factors are largely undefined. We developed an shRNA screening strategy to produce a ranked list of candidate primary silencing factors. Validation experiments performed on several of the top hits identified the SPOC domain RNA binding proteins Rbm15 and Spen and Wtap, a component of the m6A RNA methyltransferase complex, as playing an important role in the establishment of Xist-mediated silencing. Localization analysis using super-resolution 3D-SIM microscopy demonstrates that these factors co-localize with Xist RNA within the nuclear matrix subcompartment, consistent with a direct interaction.
- University of Oxford United Kingdom
- University of Pisa Italy
- RIKEN Japan
- RIKEN Center for Integrative Medical Sciences (IMS), Yokohama City, Japan Japan
QH301-705.5, Active Transport, Cell Nucleus, Cell Cycle Proteins, Article, Mice, Animals, Gene Silencing, Biology (General), Cells, Cultured, Embryonic Stem Cells, Cell Nucleus, Nuclear Proteins, RNA-Binding Proteins, Protein Structure, Tertiary, DNA-Binding Proteins, X chromosome inactivation, Xist, Spen, WTAP, Rbm15, RNA, Long Noncoding, RNA Splicing Factors, Carrier Proteins, Protein Binding
QH301-705.5, Active Transport, Cell Nucleus, Cell Cycle Proteins, Article, Mice, Animals, Gene Silencing, Biology (General), Cells, Cultured, Embryonic Stem Cells, Cell Nucleus, Nuclear Proteins, RNA-Binding Proteins, Protein Structure, Tertiary, DNA-Binding Proteins, X chromosome inactivation, Xist, Spen, WTAP, Rbm15, RNA, Long Noncoding, RNA Splicing Factors, Carrier Proteins, Protein Binding
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