Immunoinformatics approaches to explore Helicobacter Pylori proteome (Virulence Factors) to design B and T cell multi-epitope subunit vaccine
Immunoinformatics approaches to explore Helicobacter Pylori proteome (Virulence Factors) to design B and T cell multi-epitope subunit vaccine
AbstractHelicobacter Pyloriis a known causal agent of gastric malignancies and peptic ulcers. The extremophile nature of this bacterium is protecting it from designing a potent drug against it. Therefore, the use of computational approaches to design antigenic, stable and safe vaccine against this pathogen could help to control the infections associated with it. Therefore, in this study, we used multiple immunoinformatics approaches along with other computational approaches to design a multi-epitopes subunit vaccine againstH.Pylori. A total of 7 CTL and 12 HTL antigenic epitopes based on c-terminal cleavage and MHC binding scores were predicted from the four selected proteins (CagA, OipA, GroEL and cagA). The predicted epitopes were joined by AYY and GPGPG linkers. Β-defensins adjuvant was added to the N-terminus of the vaccine. For validation, immunogenicity, allergenicity and physiochemical analysis were conducted. The designed vaccine is likely antigenic in nature and produced robust and substantial interactions with Toll-like receptors (TLR-2, 4, 5, and 9). The vaccine developed was also subjected to anin silicocloning and immune response prediction model, which verified its efficiency of expression and the immune system provoking response. These analyses indicate that the suggested vaccine may produce particular immune responses againstH. pylori, but laboratory validation is needed to verify the safety and immunogenicity status of the suggested vaccine design.
- University of Swat Pakistan
- Duke University United States
- Shanghai Jiao Tong University China (People's Republic of)
- University of Science and Technology of China China (People's Republic of)
- Center for Excellence in Molecular Cell Science China (People's Republic of)
Models, Molecular, FOS: Computer and information sciences, Radiology, Nuclear Medicine and Imaging, Proteome, Epitopes, T-Lymphocyte, Prediction of Peptide-MHC Binding Affinity, Gene, Computational biology, Epitopes, Models, Adjuvant, Vaccines, Virulence, B-Lymphocyte, Life Sciences, Immunoinformatics, Bioinformatics Tools, Immunogenicity, CagA, Oncology, Antigen, Bacterial Vaccines, Vaccines, Subunit, Epitopes, B-Lymphocyte, Medicine, Epitope, Subunit, 570, Therapeutic Antibodies: Development, Engineering, and Applications, Virulence Factors, Bioinformatics, Immunology, Microbiology, Article, Role of Fibroblast Activation in Cancer Progression, Biochemistry, Genetics and Molecular Biology, Virology, Health Sciences, Genetics, Humans, Computer Simulation, Amino Acid Sequence, Molecular Biology, Biology, Helicobacter pylori, FOS: Clinical medicine, In silico, Molecular, Computational Biology, Immune system, T-Lymphocyte, Drug Design, FOS: Biological sciences, Reverse vaccinology
Models, Molecular, FOS: Computer and information sciences, Radiology, Nuclear Medicine and Imaging, Proteome, Epitopes, T-Lymphocyte, Prediction of Peptide-MHC Binding Affinity, Gene, Computational biology, Epitopes, Models, Adjuvant, Vaccines, Virulence, B-Lymphocyte, Life Sciences, Immunoinformatics, Bioinformatics Tools, Immunogenicity, CagA, Oncology, Antigen, Bacterial Vaccines, Vaccines, Subunit, Epitopes, B-Lymphocyte, Medicine, Epitope, Subunit, 570, Therapeutic Antibodies: Development, Engineering, and Applications, Virulence Factors, Bioinformatics, Immunology, Microbiology, Article, Role of Fibroblast Activation in Cancer Progression, Biochemistry, Genetics and Molecular Biology, Virology, Health Sciences, Genetics, Humans, Computer Simulation, Amino Acid Sequence, Molecular Biology, Biology, Helicobacter pylori, FOS: Clinical medicine, In silico, Molecular, Computational Biology, Immune system, T-Lymphocyte, Drug Design, FOS: Biological sciences, Reverse vaccinology
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