The Histone-H3K4-Specific Demethylase KDM5B Binds to Its Substrate and Product through Distinct PHD Fingers
The Histone-H3K4-Specific Demethylase KDM5B Binds to Its Substrate and Product through Distinct PHD Fingers
The histone lysine demethylase KDM5B regulates gene transcription and cell differentiation. It contains three PHD fingers, the biological roles of which remain elusive. Here, we show that the first PHD1 finger of KDM5B binds unmodified histone H3, whereas the third PHD3 finger prefers the trimethylated mark, H3K4me3. RNA-seq analysis indicates that KDM5B functions as a transcriptional repressor for a set of genes. Biochemical analysis reveals that KDM5B associates with components of the nucleosome remodeling and deacetylase (NuRD) complex and may cooperate with HDAC1 in gene repression. Compared with the estrogen receptor positive breast cancers, KDM5B is downregulated in the triple-negative breast cancer. Overexpression of KDM5B in the MDA-MB 231 breast cancer cells suppresses cell migration and invasion ability, and the PHD1-H3K4me0 interaction is important for inhibition of migration. These findings highlight tumor-suppressive functions of KDM5B in triple-negative breast cancer cells and suggest a novel multivalent mechanism for KDM5B-mediated transcriptional regulation.
- University of North Carolina at Chapel Hill United States
- University of Washington United States
- The University of Texas at Austin United States
- University of North Carolina School of Medicine United States
- Dan L Duncan Comprehensive Cancer Center United States
Jumonji Domain-Containing Histone Demethylases, Binding Sites, QH301-705.5, Molecular Sequence Data, Nuclear Proteins, Breast Neoplasms, Histone Deacetylase 1, Chromatin Assembly and Disassembly, Gene Expression Regulation, Neoplastic, Histones, Repressor Proteins, Cell Line, Tumor, Humans, Amino Acid Sequence, Biology (General), Mi-2 Nucleosome Remodeling and Deacetylase Complex, Protein Binding
Jumonji Domain-Containing Histone Demethylases, Binding Sites, QH301-705.5, Molecular Sequence Data, Nuclear Proteins, Breast Neoplasms, Histone Deacetylase 1, Chromatin Assembly and Disassembly, Gene Expression Regulation, Neoplastic, Histones, Repressor Proteins, Cell Line, Tumor, Humans, Amino Acid Sequence, Biology (General), Mi-2 Nucleosome Remodeling and Deacetylase Complex, Protein Binding
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