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Diffusive Motions Control the Folding and Unfolding Kinetics of the Apomyoglobin pH 4 Molten Globule Intermediate

Authors: Sebastien Weisbuch; Carlos H.I. Ramos; Marc Jamin;

Diffusive Motions Control the Folding and Unfolding Kinetics of the Apomyoglobin pH 4 Molten Globule Intermediate

Abstract

The sperm whale apomyoglobin pH 4 folding intermediate exists in two forms, Ia and Ib, that mimic transient kinetic intermediates in the folding of the native protein at pH 6. To characterize the nature of the kinetic barrier that controls the formation of the earliest intermediate Ia, we have investigated the effects of small viscogenic cosolvents on its folding and unfolding kinetics. The kinetics are measurable by stopped-flow fluorescence and follow a cooperative two-state model in the absence and presence of cosolvents. Small cosolvents stabilize Ia, but, by applying the isostability test to separate the viscogenic effect of the cosolvent from its stabilizing effect, we found that, in both folding and unfolding conditions, the apparent rate constant decreases when solvent viscosity increases. The unitary inverse dependence of the apparent rate constant on solvent viscosity indicates a diffusion-controlled reaction. This result is consistent with the hypothesis that folding of the apomyoglobin pH 4 intermediate obeys a diffusion-collision model. Additionally, the temperature dependence of the reaction rate at constant viscosity indicates that the formation of Ia is also controlled by an energy barrier. Linear free energy relationships show that the transition state of the U Ia reaction is compact and buries 45% of the surface area that is buried in native apomyoglobin. We conclude that the transition state of the U Ia reaction resembles that for the formation of native proteins; namely, it is dry and its compactness is closer to that of the folded (Ia) form than of the unfolded form.

Keywords

Protein Denaturation, Protein Folding, Sucrose, Dose-Response Relationship, Drug, Sperm Whale, Myoglobin, Circular Dichroism, Temperature, Hydrogen-Ion Concentration, Protein Structure, Secondary, Protein Structure, Tertiary, Diffusion, Kinetics, Motion, Spectrometry, Fluorescence, Solvents, Animals, Spectrophotometry, Ultraviolet, Apoproteins, Nuclear Magnetic Resonance, Biomolecular

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
17
Average
Average
Average