Stairway Plot 2: demographic history inference with folded SNP frequency spectra
Copyright policy )Stairway Plot 2: demographic history inference with folded SNP frequency spectra
AbstractInferring the demographic histories of populations has wide applications in population, ecological, and conservation genomics. We present Stairway Plot 2, a cross-platform program package for this task using SNP frequency spectra. It is based on a nonparametric method with the capability of handling folded SNP frequency spectra (that is, when the ancestral alleles of the SNPs are unknown) of thousands of samples produced with genotyping-by-sequencing technologies; therefore, it is particularly suitable for nonmodel organisms.
- Florida Southern College United States
- University of South Florida - University of South Florida, Tampa
- University of South Florida United States
- University of Florida United States
- The University of Texas Health Science Center at Houston United States
Genotyping Techniques, Models, Genetic, QH301-705.5, Method, Genomics, QH426-470, Polymorphism, Single Nucleotide, Genetics, Humans, Biology (General), Alleles, Demography
Genotyping Techniques, Models, Genetic, QH301-705.5, Method, Genomics, QH426-470, Polymorphism, Single Nucleotide, Genetics, Humans, Biology (General), Alleles, Demography
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