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PLANT PHYSIOLOGY
Article . 2005 . Peer-reviewed
License: OUP Standard Publication Reuse
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PLANT PHYSIOLOGY
Article
Data sources: UnpayWall
PLANT PHYSIOLOGY
Article . 2005
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Phylogenomic Analysis of the Receptor-Like Proteins of Rice and Arabidopsis

Authors: Lillian K, Fritz-Laylin; Nandini, Krishnamurthy; Mahmut, Tör; Kimmen V, Sjölander; Jonathan D G, Jones;

Phylogenomic Analysis of the Receptor-Like Proteins of Rice and Arabidopsis

Abstract

Abstract The tomato (Lycopersicon esculentum) Cf-9 resistance gene encodes the first characterized member of the plant receptor-like protein (RLP) family. Other RLPs such as CLAVATA2 and TOO MANY MOUTHS are known to regulate development. The domain structure of RLPs consists of extracellular leucine-rich repeats, a transmembrane helix, and a short cytoplasmic region. Here, we identify 90 RLPs in rice (Oryza sativa) and compare them with functionally characterized RLPs from different plant species and with 56 Arabidopsis (Arabidopsis thaliana) RLPs, including the downy mildew resistance protein RPP27. Many RLPs cluster into four distinct superclades, three of which include RLPs known to be involved in plant defense. Sequence comparisons reveal diagnostic amino acid residues that may specify different molecular functions in different RLP subtypes. This analysis of rice RLPs thus identified at least 73 candidate resistance genes and four genes potentially involved in development. Due to the synteny between rice and other Gramineae, this analysis should provide valuable tools for experimental studies in rice and other cereals.

Related Organizations
Keywords

Sequence Homology, Amino Acid, Arabidopsis Proteins, Molecular Sequence Data, Arabidopsis, Oryza, Receptors, Cell Surface, Genes, Plant, Gene Expression Regulation, Plant, Amino Acid Sequence, Sequence Alignment, Conserved Sequence, Genome, Plant, Phylogeny, Plant Proteins

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
205
Top 1%
Top 1%
Top 10%
hybrid