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Parallel evolution of the make–accumulate–consume strategy in Saccharomyces and Dekkera yeasts

Authors: Furkan Orhan; Megan Woolfit; Megan Woolfit; Concetta Compagno; Linda Hellborg; Jure Piškur; Elizbieta Rozpedowska; +3 Authors

Parallel evolution of the make–accumulate–consume strategy in Saccharomyces and Dekkera yeasts

Abstract

Saccharomyces yeasts degrade sugars to two-carbon components, in particular ethanol, even in the presence of excess oxygen. This characteristic is called the Crabtree effect and is the background for the 'make-accumulate-consume' life strategy, which in natural habitats helps Saccharomyces yeasts to out-compete other microorganisms. A global promoter rewiring in the Saccharomyces cerevisiae lineage, which occurred around 100 mya, was one of the main molecular events providing the background for evolution of this strategy. Here we show that the Dekkera bruxellensis lineage, which separated from the Saccharomyces yeasts more than 200 mya, also efficiently makes, accumulates and consumes ethanol and acetic acid. Analysis of promoter sequences indicates that both lineages independently underwent a massive loss of a specific cis-regulatory element from dozens of genes associated with respiration, and we show that also in D. bruxellensis this promoter rewiring contributes to the observed Crabtree effect.

Countries
Australia, Italy
Keywords

Cerevisiae, 1300 Biochemistry, Genetics and Molecular Biology, Saccharomyces cerevisiae, Genome Duplication, DNA, Mitochondrial, Article, Brettanomyces-Bruxellensis, Acid, 3100 Physics and Astronomy, Anaerobiosis, Biological Sciences ; Evolution ; Genetics Biotechnology, DNA, Fungal, Promoter Regions, Genetic, Phylogeny, Acetic Acid, Base Sequence, Dekkera, Ethanol, Sequence Analysis, DNA, 1600 Chemistry, Biological Evolution, Metabolism, Glucose, RNA, Ribosomal, Fermentation

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    153
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    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
153
Top 1%
Top 10%
Top 1%
Green
gold