De novo design of transmembrane β barrels
De novo design of transmembrane β barrels
Building a barrel Computational design offers the possibility of making proteins with customized structures and functions. The range of accessible protein scaffolds has expanded with the design of increasingly complex cytoplasmic proteins and, recently, helical membrane proteins. Vorobieva et al. describe the successful computational design of eight-stranded transmembrane β-barrel proteins (TMBs). Using an iterative approach, they show the importance of negative design to prevent off-target structures and gain insight into the sequence determinants of TMB folding. Twenty-three designs satisfied biochemical screens for a TMB structure, and two structures were experimentally validated by nuclear magnetic resonance spectroscopy or x-ray crystallography. This is a step toward the custom design of pores for applications such as single-molecule sequencing. Science , this issue p. eabc8182
- University of Oxford United Kingdom
- University of Leeds United Kingdom
- Johns Hopkins University United States
- University of Mary United States
- University of Washington United States
Models, Molecular, Protein Folding, Magnetic Resonance Spectroscopy, Protein Conformation, Protein Stability, Lipid Bilayers, Membrane Proteins, Hydrogen Bonding, Membranes, Artificial, Crystallography, X-Ray, Protein Engineering, Computer Simulation, Protein Conformation, beta-Strand, Amino Acid Sequence, Hydrophobic and Hydrophilic Interactions, Micelles
Models, Molecular, Protein Folding, Magnetic Resonance Spectroscopy, Protein Conformation, Protein Stability, Lipid Bilayers, Membrane Proteins, Hydrogen Bonding, Membranes, Artificial, Crystallography, X-Ray, Protein Engineering, Computer Simulation, Protein Conformation, beta-Strand, Amino Acid Sequence, Hydrophobic and Hydrophilic Interactions, Micelles
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