Studies of the 5′ Exonuclease and Endonuclease Activities of CPSF-73 in Histone Pre-mRNA Processing
Studies of the 5′ Exonuclease and Endonuclease Activities of CPSF-73 in Histone Pre-mRNA Processing
Processing of histone pre-mRNA requires a single 3′ endonucleolytic cleavage guided by the U7 snRNP that binds downstream of the cleavage site. Following cleavage, the downstream cleavage product (DCP) is rapidly degraded in vitro by a nuclease that also depends on the U7 snRNP. Our previous studies demonstrated that the endonucleolytic cleavage is catalyzed by the cleavage/polyadenylation factor CPSF-73. Here, by using RNA substrates with different nucleotide modifications, we characterize the activity that degrades the DCP. We show that the degradation is blocked by a 2′-O-methyl nucleotide and occurs in the 5′-to-3′ direction. The U7-dependent 5′ exonuclease activity is processive and continues degrading the DCP substrate even after complete removal of the U7-binding site. Thus, U7 snRNP is required only to initiate the degradation. UV cross-linking studies demonstrate that the DCP and its 5′-truncated version specifically interact with CPSF-73, strongly suggesting that in vitro, the same protein is responsible for the endonucleolytic cleavage of histone pre-mRNA and the subsequent degradation of the DCP. By using various RNA substrates, we define important space requirements upstream and downstream of the cleavage site that dictate whether CPSF-73 functions as an endonuclease or a 5′ exonuclease. RNA interference experiments with HeLa cells indicate that degradation of the DCP does not depend on the Xrn2 5′ exonuclease, suggesting that CPSF-73 degrades the DCP both in vitro and in vivo.
- University of North Carolina at Chapel Hill United States
Base Sequence, Nucleotides, RNA Stability, Ribonucleoprotein, U7 Small Nuclear, Cleavage And Polyadenylation Specificity Factor, Molecular Sequence Data, Regulatory Sequences, Nucleic Acid, Endonucleases, Phosphates, Histones, Mice, Exoribonucleases, RNA Precursors, Animals, Humans, Drosophila, Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating), RNA Processing, Post-Transcriptional, Phosphorus Radioisotopes, HeLa Cells
Base Sequence, Nucleotides, RNA Stability, Ribonucleoprotein, U7 Small Nuclear, Cleavage And Polyadenylation Specificity Factor, Molecular Sequence Data, Regulatory Sequences, Nucleic Acid, Endonucleases, Phosphates, Histones, Mice, Exoribonucleases, RNA Precursors, Animals, Humans, Drosophila, Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating), RNA Processing, Post-Transcriptional, Phosphorus Radioisotopes, HeLa Cells
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