Substrates and mechanism of 2-hydroxyglutaryl-CoA-dehydratase from Clostridium symbiosum
doi: 10.17192/z2009.0155
Substrates and mechanism of 2-hydroxyglutaryl-CoA-dehydratase from Clostridium symbiosum
Muconyl-CoA, 2-Hydroxyadipoyl-CoA, Oxalocrotonyl-CoA und Butynedioyl- CoA wurden als neue Substrate für die (R)-2-Hydroxyglutaryl-CoADehydratase aus Clostridium symbiosum synthetisiert und charakterisiert. Die Spezifität des Enzyms für diese Subtrate wurde bestimmt und die Reaktionsprodukte mit MALDI-TOF-Massenspektrometrie nachgewiesen. Als Inhibitor der Dehydrataseaktivität (Ki = 0.069 mM) wurde 2,2-Difluoroglutaryl- CoA synthetisiert und charaktersiert. Die in früheren Untersuchungen gezeigte Inaktivierung der Dehydratase durch Metronidazol ist wahrscheinlich auf die Zerstörung des Eisen-Schwefel-Clusters des Aktivators zurückzuführen. Der Aktivator wird als akzesorisches Enzym für den Start der Dehydratasereaktion benötigt. Weiterhin wurde für die Lactyl-CoA-Dehydratase aus Clostridium propionicum ein Aktivitätstest entwickelt und das Enzym bis zur Homogenität gereinigt. Eine Kombination aus kinetischen Experimenten mit (R)-2-Hydroxyglutaryl-CoADehydratase und Lactyl-CoA-Dehydratase in Gegenwart ihrer natürlichen Subtrate und theoretischer Kalkulationen zeigt, dass die chemische Struktur der 2-Hydroxyacyl-CoA-Esters einen großen Einfluss auf das Gleichgewicht der Umwandlung zum 2-Enoyl-CoA hat. In dieser Arbeit gelang es, zwei neue Substrate (Oxalocrotonat und 2- Hydroxyadipat) und einen kompetitiven Inhibitor (2,2-DifluoroglutaratHydroxyadipat) und einen kompetitiven Inhibitor (2,2-Difluoroglutarat, Ki = 0.62 mM) der (R)-2-Hydroxyglutarat-Dehydrogenase aus Acidaminococcus fermentans zu identifizieren. Die biochemischen Beobachtungen konnten durch die Modelierung dieser Substanzen in das aktive Zentrum des Enzyms unterstützt werden.
Muconyl-CoA, 2-hydroxyadipoyl-CoA, oxalocrotonyl-CoA and butynedioyl- CoA were synthesised and characterised as substrates of the (R)-2- hydroxyglutaryl-CoA dehydratase from Clostridium symbiosum. The specificity of the enzyme for these substrates were determined and the reaction products identified by MALDI-TOF mass spectrometry. 2,2-Difluoroglutaryl-CoA was synthesised and characterised as an inhibitor of the dehydratase activity (Ki = 0.069 mM). It could be shown that the inhibition of the dehydratase by metronidazole observed by earlier investigators was most likely due to the destruction of the iron-sulfur cluster of the activator (which is an accessory enzyme required to start the dehydratase catalysis). Further, lactyl-CoA dehydratase from Clostridium propionicum was assayed spectrophotometrically and purified to apparent homogeneity. A combination of kinetic experiments performed with (R)-2-hydroxyglutaryl-CoA dehydratase and lactyl-CoA dehydratase and their respective substrates, aand theoretical calculations showed that the chemical structure of the 2-hydroxyacyl-CoA had a large effect on the equilibrium constant of its conversion to 2-enoyl-CoA. Finally, two new substrates (oxalocrotonate and 2-hydroxyadipate), and a competitive inhibitor (2,2-difluoroglutarate, Ki = 0.62 mM) of the (R)-2- hydroxyglutarate dehydrogenase from Acidaminococcus fermentans were characterised. Modelling of these compounds into the active site of this enzyme supported the biochemical observations.
- Philipps-University of Marburg Germany
2-hydroxyglutaryl-CoA, 570, Dehydration, lactyl-CoA, [4Fe-4S] Cluster, Coenzym A, Lactyl-CoA, 540, Clostridium symbiosum ; Hydroxyglutaryl-CoA-Dehydratase <2-> ; [4Fe-4S] cluster ; [4Fe-4S] Cluster ; lactyl-CoA ; 2-hydroxyglutaryl-CoA ; Dehydration ; Clostridium propionicum ; Dehydratase ; Acidaminococcus fermentans ; Coenzym A ; Lactyl-CoA ; 2-Hydroxyglutarat-Dehydrogenase ; 2009, Life sciences -- Biowissenschaften, Biologie, Life sciences, Clostridium symbiosum, Hydroxyglutaryl-CoA-Dehydratase <2->, Clostridium propionicum, Hydroxyglutaryl-CoA-Dehydratase [2-], Biowissenschaften, Biologie, 2-Hydroxyglutarat-Dehydrogenase, Biowissenschaften, Dehydratase, ddc:570, Acidaminococcus fermentans, Biologie, [4Fe-4S] cluster, ddc: ddc:570
2-hydroxyglutaryl-CoA, 570, Dehydration, lactyl-CoA, [4Fe-4S] Cluster, Coenzym A, Lactyl-CoA, 540, Clostridium symbiosum ; Hydroxyglutaryl-CoA-Dehydratase <2-> ; [4Fe-4S] cluster ; [4Fe-4S] Cluster ; lactyl-CoA ; 2-hydroxyglutaryl-CoA ; Dehydration ; Clostridium propionicum ; Dehydratase ; Acidaminococcus fermentans ; Coenzym A ; Lactyl-CoA ; 2-Hydroxyglutarat-Dehydrogenase ; 2009, Life sciences -- Biowissenschaften, Biologie, Life sciences, Clostridium symbiosum, Hydroxyglutaryl-CoA-Dehydratase <2->, Clostridium propionicum, Hydroxyglutaryl-CoA-Dehydratase [2-], Biowissenschaften, Biologie, 2-Hydroxyglutarat-Dehydrogenase, Biowissenschaften, Dehydratase, ddc:570, Acidaminococcus fermentans, Biologie, [4Fe-4S] cluster, ddc: ddc:570
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