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Gene
Article
License: implied-oa
Data sources: UnpayWall
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Gene
Article . 2012
License: Elsevier Non-Commercial
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Gene
Article . 2012 . Peer-reviewed
License: Elsevier Non-Commercial
Data sources: Crossref
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Ewing's sarcoma: Analysis of single nucleotide polymorphism in the EWS gene

Authors: Elisa C. De Toni; Rafael Roesler; Clarice Sampaio Alho; Juliane Bentes Picanço; Ana Lucia Abujamra; Caroline Brunetto de Farias; Deborah S.B.S. Silva; +3 Authors

Ewing's sarcoma: Analysis of single nucleotide polymorphism in the EWS gene

Abstract

We aimed to investigate single nucleotide polymorphisms (SNPs) in the EWS gene breaking region in order to analyze Ewing's sarcoma susceptibility. The SNPs were investigated in a healthy subject population and in Ewing's sarcoma patients from Southern Brazil. Genotyping was performed by TaqMan® assay for allelic discrimination using Real-Time PCR. The analysis of incidence of SNPs or different SNP-arrangements revealed a higher presence of homozygote TT-rs4820804 in Ewing's sarcoma patients (p=0.02; Chi Square Test). About 300 bp from the rs4820804 SNP lies a palindromic hexamer (5'-GCTAGC-3') and three nucleotides (GTC), which were previously identified to be in close vicinity of the breakpoint junction in both EWS and FLI1 genes. This DNA segment surrounding the rs4820804 SNP is likely to indicate a breakpoint region. If the T-rs4820804 allele predisposes a DNA fragment to breakage, homozygotes (TT-rs4820804) would have double the chance of having a chromosome break, increasing the chances for a translocation to occur. In conclusion, the TT-rs4820804 EWS genotype can be associated with Ewing's sarcoma and the SNP rs4820804 can be a candidate marker to understand Ewing's sarcoma susceptibility.

Keywords

Adult, Male, Adolescent, Molecular Sequence Data, SNP, Bone Neoplasms, Sarcoma, Ewing, Real-Time Polymerase Chain Reaction, Polymorphism, Single Nucleotide, rs4820804, rs4820803, Young Adult, Genetics, Humans, Genetic Predisposition to Disease, Child, Base Sequence, Infant, Ewing's sarcoma, DNA, Neoplasm, Prognosis, rs2301291, Case-Control Studies, Child, Preschool, Female, RNA-Binding Protein EWS

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    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
12
Average
Average
Top 10%
hybrid