Shifts in Ribosome Engagement Impact Key Gene Sets in Neurodevelopment and Ubiquitination in Rett Syndrome
pmid: 32209477
Shifts in Ribosome Engagement Impact Key Gene Sets in Neurodevelopment and Ubiquitination in Rett Syndrome
Regulation of translation during human development is poorly understood, and its dysregulation is associated with Rett syndrome (RTT). To discover shifts in mRNA ribosomal engagement (RE) during human neurodevelopment, we use parallel translating ribosome affinity purification sequencing (TRAP-seq) and RNA sequencing (RNA-seq) on control and RTT human induced pluripotent stem cells, neural progenitor cells, and cortical neurons. We find that 30% of transcribed genes are translationally regulated, including key gene sets (neurodevelopment, transcription and translation factors, and glycolysis). Approximately 35% of abundant intergenic long noncoding RNAs (lncRNAs) are ribosome engaged. Neurons translate mRNAs more efficiently and have longer 3' UTRs, and RE correlates with elements for RNA-binding proteins. RTT neurons have reduced global translation and compromised mTOR signaling, and >2,100 genes are translationally dysregulated. NEDD4L E3-ubiquitin ligase is translationally impaired, ubiquitinated protein levels are reduced, and protein targets accumulate in RTT neurons. Overall, the dynamic translatome in neurodevelopment is disturbed in RTT and provides insight into altered ubiquitination that may have therapeutic implications.
- University of Toronto Canada
- University Health Network Canada
- Hospital for Sick Children Canada
- Vector Institute Canada
Neurons, Ribosomal Proteins, RNA, Untranslated, Base Sequence, QH301-705.5, Methyl-CpG-Binding Protein 2, Nedd4 Ubiquitin Protein Ligases, Induced Pluripotent Stem Cells, Gene Expression Regulation, Developmental, RNA-Binding Proteins, Nervous System, Mice, Protein Biosynthesis, Rett Syndrome, Animals, Female, Biology (General), 3' Untranslated Regions, Glycolysis, Ribosomes, Protein Binding, Transcription Factors
Neurons, Ribosomal Proteins, RNA, Untranslated, Base Sequence, QH301-705.5, Methyl-CpG-Binding Protein 2, Nedd4 Ubiquitin Protein Ligases, Induced Pluripotent Stem Cells, Gene Expression Regulation, Developmental, RNA-Binding Proteins, Nervous System, Mice, Protein Biosynthesis, Rett Syndrome, Animals, Female, Biology (General), 3' Untranslated Regions, Glycolysis, Ribosomes, Protein Binding, Transcription Factors
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