Genome-scale identification of SARS-CoV-2 and pan-coronavirus host factor networks
pmc: PMC7553157 , PMC7796900
Genome-scale identification of SARS-CoV-2 and pan-coronavirus host factor networks
SUMMARYThe COVID-19 pandemic has claimed the lives of more than one million people worldwide. The causative agent, SARS-CoV-2, is a member of theCoronaviridaefamily, which are viruses that cause respiratory infections of varying severity. The cellular host factors and pathways co-opted by SARS-CoV-2 and other coronaviruses in the execution of their life cycles remain ill-defined. To develop an extensive compendium of host factors required for infection by SARS-CoV-2 and three seasonal coronaviruses (HCoV-OC43, HCoV-NL63, and HCoV-229E), we performed parallel genome-scale CRISPR knockout screens. These screens uncovered multiple host factors and pathways with pan-coronavirus and virus-specific functional roles, including major dependency on glycosaminoglycan biosynthesis, SREBP signaling, and glycosylphosphatidylinositol biosynthesis, as well as an unexpected requirement for several poorly characterized proteins. We identified an absolute requirement for the VTT-domain containing protein TMEM41B for infection by SARS-CoV-2 and all other coronaviruses. This humanCoronaviridaehost factor compendium represents a rich resource to develop new therapeutic strategies for acute COVID-19 and potential future coronavirus spillover events.HIGHLIGHTSGenome-wide CRISPR screens for SARS-CoV-2, HCoV-OC43, HCoV-NL63, and HCoV-229E coronavirus host factors.Parallel genome-wide CRISPR screening uncovered host factors and pathways with pan-coronavirus and virus-specific functional roles.Coronaviruses co-opt multiple biological pathways, including glycosaminoglycan biosynthesis, SREBP signaling, and glycosylphosphatidylinositol biosynthesis and anchoring, among others.TMEM41B - a poorly understood factor with roles in autophagy and lipid mobilization - is a critical pan-coronavirus host factor.
- Rockefeller University United States
- University Hospital Heidelberg Germany
- NYU Langone’s Laura and Isaac Perlmutter Cancer Center United States
- Memorial Sloan Kettering Cancer Center United States
- New York University Langone Medical Center United States
SARS-CoV-2, Membrane Proteins, General Biochemistry, Genetics and Molecular Biology, Article, Cell Line, Coronavirus OC43, Human, Coronavirus NL63, Human, Gene Knockout Techniques, HEK293 Cells, A549 Cells, Coronavirus 229E, Human, Host-Pathogen Interactions, Protein Interaction Mapping, Humans, Clustered Regularly Interspaced Short Palindromic Repeats, Coronavirus Infections, Metabolic Networks and Pathways, Genome-Wide Association Study
SARS-CoV-2, Membrane Proteins, General Biochemistry, Genetics and Molecular Biology, Article, Cell Line, Coronavirus OC43, Human, Coronavirus NL63, Human, Gene Knockout Techniques, HEK293 Cells, A549 Cells, Coronavirus 229E, Human, Host-Pathogen Interactions, Protein Interaction Mapping, Humans, Clustered Regularly Interspaced Short Palindromic Repeats, Coronavirus Infections, Metabolic Networks and Pathways, Genome-Wide Association Study
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