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DI-fusion
Article . 2015 . Peer-reviewed
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Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Authors: Verfaillie, Annelien; Imrichova, Hana; Kalender Atak, Zeynep; Dewaele, Michael; Rambow, Florian; Hulselmans, Gert; Christiaens, Valerie; +11 Authors

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Abstract

AbstractTranscriptional reprogramming of proliferative melanoma cells into a phenotypically distinct invasive cell subpopulation is a critical event at the origin of metastatic spreading. Here we generate transcriptome, open chromatin and histone modification maps of melanoma cultures; and integrate this data with existing transcriptome and DNA methylation profiles from tumour biopsies to gain insight into the mechanisms underlying this key reprogramming event. This shows thousands of genomic regulatory regions underlying the proliferative and invasive states, identifying SOX10/MITF and AP-1/TEAD as regulators, respectively. Knockdown of TEADs shows a previously unrecognized role in the invasive gene network and establishes a causative link between these transcription factors, cell invasion and sensitivity to MAPK inhibitors. Using regulatory landscapes and in silico analysis, we show that transcriptional reprogramming underlies the distinct cellular states present in melanoma. Furthermore, it reveals an essential role for the TEADs, linking it to clinically relevant mechanisms such as invasion and resistance.

Keywords

TAZ, CUTANEOUS MELANOMA, Transcription, Genetic, PHENOTYPE, MALIGNANT-MELANOMA, Histones, HUMAN GENOME, Protein Isoforms, Gene Regulatory Networks, RNA, Small Interfering, Melanoma, GENE-EXPRESSION, SOXE Transcription Factors, TEA Domain Transcription Factors, Nuclear Proteins, Cellular Reprogramming, EPITHELIAL-MESENCHYMAL TRANSITION, Chromatin, Multidisciplinary Sciences, DNA-Binding Proteins, Gene Expression Regulation, Neoplastic, Technologie de l'environnement, contrôle de la pollution, DIFFERENTIATION, Cell Transformation, Neoplastic, Science & Technology - Other Topics, Signal Transduction, CHROMOSOME CONFORMATION CAPTURE, Antineoplastic Agents, R/BIOCONDUCTOR PACKAGE, Article, ENHANCER, Cell Line, Tumor, Chimie, BREAST-CANCER, Humans, Neoplasm Invasiveness, Protein Kinase Inhibitors, MITF, Microphthalmia-Associated Transcription Factor, Science & Technology, Physique, Astronomie, DNA Methylation, ENCYCLOPEDIA, Transcription Factor AP-1, contrôle de la pollution, TRANSCRIPTION FACTOR-BINDING, Technologie de l'environnement, Transcriptome, Transcription Factors

  • BIP!
    Impact byBIP!
    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    400
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 0.1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 1%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
400
Top 0.1%
Top 1%
Top 1%
Green
gold