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The Plant Journal
Article
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The Plant Journal
Article . 1999 . Peer-reviewed
License: Wiley Online Library User Agreement
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Dimerization and DNA binding of auxin response factors

Authors: T, Ulmasov; G, Hagen; T J, Guilfoyle;

Dimerization and DNA binding of auxin response factors

Abstract

SummaryAuxin response factors (ARFs) are transcription factors that bind with specificity to TGTCTC auxin response elements (AuxREs) found in promoters of primary/early auxin response genes. ARFs are encoded by a multi‐gene family, consisting of more than 10 genes. Ten ARFs have been analyzed by Northern analysis and were found to be expressed in all major plant organs and suspension culture cells of Arabidopsis. The predicted amino acid sequences indicate that the 10 ARFs contain a novel amino‐terminal DNA binding domain and a carboxyl‐terminal dimerization domain, with the exception of ARF3 which lacks this dimerization domain. All ARFs tested bind with specificity to the TGTCTC AuxRE, but there are subtle variations in the sequence requirements at positions 5 (T) and 6 (C) of the AuxRE. While the amino‐terminal domain of about 350 amino acids is sufficient for binding ARF1 to TGTCTC AuxREs, this domain is not sufficient for the binding of some other ARFs to palindromic AuxREs. Our results suggest that ARFs must form dimers on palindromic TGTCTC AuxREs to bind stably, and this dimerization may be facilitated by conserved motifs found in ARF carboxyl‐terminal domains. Dimerization in at least some cases may dictate which ARF(s) are targeted to AuxREs.

Related Organizations
Keywords

Binding Sites, DNA, Complementary, DNA, Plant, Indoleacetic Acids, Sequence Homology, Amino Acid, Arabidopsis Proteins, Protein Conformation, Molecular Sequence Data, Arabidopsis, Gene Expression, Genes, Plant, DNA-Binding Proteins, Multigene Family, Amino Acid Sequence, Cloning, Molecular, Dimerization, Plant Proteins, Transcription Factors

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Powered by OpenAIRE graph
citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
487
Top 1%
Top 1%
Top 1%
bronze