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Molecular and Cellular Biology
Article . 1987 . Peer-reviewed
License: ASM Journals Non-Commercial TDM
Data sources: Crossref
Molecular and Cellular Biology
Article . 1987 . Peer-reviewed
Data sources: Crossref
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Codon Replacement in the PGK1 Gene of Saccharomyces Cerevisiae: Experimental Approach to study the role of Biased Codon Usage in Gene Expression

Authors: A Hoekema; Mark Vasser; R A Kastelein; H. A. de Boer;

Codon Replacement in the PGK1 Gene of Saccharomyces Cerevisiae: Experimental Approach to study the role of Biased Codon Usage in Gene Expression

Abstract

The coding sequences of genes in the yeast Saccharomyces cerevisiae show a preference for 25 of the 61 possible coding triplets. The degree of this biased codon usage in each gene is positively correlated to its expression level. Highly expressed genes use these 25 major codons almost exclusively. As an experimental approach to studying biased codon usage and its possible role in modulating gene expression, systematic codon replacements were carried out in the highly expressed PGK1 gene. The expression of phosphoglycerate kinase (PGK) was studied both on a high-copy-number plasmid and as a single copy gene integrated into the chromosome. Replacing an increasing number (up to 39% of all codons) of major codons with synonymous minor ones at the 5' end of the coding sequence caused a dramatic decline of the expression level. The PGK protein levels dropped 10-fold. The steady-state mRNA levels also declined, but to a lesser extent (threefold). Our data indicate that this reduction in mRNA levels was due to destabilization caused by impaired translation elongation at the minor codons. By preventing translation of the PGK mRNAs by the introduction of a stop codon 3' and adjacent to the start codon, the steady-state mRNA levels decreased dramatically. We conclude that efficient mRNA translation is required for maintaining mRNA stability in S. cerevisiae. These findings have important implications for the study of the expression of heterologous genes in yeast cells.

Related Organizations
Keywords

Base Sequence, Transcription, Genetic, Genes, Fungal, DNA, Recombinant, DNA Restriction Enzymes, Saccharomyces cerevisiae, Phosphoglycerate Kinase, Genes, Amino Acid Sequence, RNA, Messenger, Codon, Plasmids

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
196
Top 10%
Top 1%
Top 1%
bronze