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Structural characterization of a highly-potent V3-glycan broadly neutralizing antibody bound to natively-glycosylated HIV-1 envelope

Authors: Barnes, Christopher O; Gristick, Harry B; Freund, Natalia T; Escolano, Amelia; Lyubimov, Artem Y; Hartweger, Harald; West, Anthony P; +3 Authors

Structural characterization of a highly-potent V3-glycan broadly neutralizing antibody bound to natively-glycosylated HIV-1 envelope

Abstract

AbstractBroadly neutralizing antibodies (bNAbs) isolated from HIV-1-infected individuals inform HIV-1 vaccine design efforts. Developing bNAbs with increased efficacy requires understanding how antibodies interact with the native oligomannose and complex-type N-glycan shield that hides most protein epitopes on HIV-1 envelope (Env). Here we present crystal structures, including a 3.8-Å X-ray free electron laser dataset, of natively glycosylated Env trimers complexed with BG18, the most potent V3/N332gp120 glycan-targeting bNAb reported to date. Our structures show conserved contacts mediated by common D gene-encoded residues with the N332gp120 glycan and the gp120 GDIR peptide motif, but a distinct Env-binding orientation relative to PGT121/10-1074 bNAbs. BG18’s binding orientation provides additional contacts with N392gp120 and N386gp120 glycans near the V3-loop base and engages protein components of the V1-loop. The BG18-natively-glycosylated Env structures facilitate understanding of bNAb–glycan interactions critical for using V3/N332gp120 bNAbs therapeutically and targeting their epitope for immunogen design.

Keywords

570, Glycosylation, Science, Immunology, 610, HIV Infections, CHO Cells, HIV Antibodies, HIV Envelope Protein gp120, Crystallography, X-Ray, Antibodies, Article, env Gene Products, Vaccine Related, Epitopes, Cricetulus, Protein Domains, Polysaccharides, Cricetinae, Animals, Humans, Vaccine Related (AIDS), Neutralizing, Crystallography, Biomedical and Clinical Sciences, Prevention, Q, env Gene Products, Human Immunodeficiency Virus, Biological Sciences, Antibodies, Neutralizing, Good Health and Well Being, HEK293 Cells, Medical Microbiology, X-Ray, HIV-1, HIV/AIDS, Immunization, Biochemistry and Cell Biology, Protein Multimerization, Infection, Human Immunodeficiency Virus, Protein Binding

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
94
Top 1%
Top 10%
Top 1%
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gold