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Human Immunology
Article
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PubMed Central
Other literature type . 2013
Data sources: PubMed Central
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Human Immunology
Article . 2013 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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Differential effects of a common splice site polymorphism on the generation of OAS1 variants in human bronchial epithelial cells

Authors: Noguchi, Satoshi; Hamano, Emi; Matsushita, Ikumi; Hijikata, Minako; Ito, Hideyuki; Nagase, Takahide; Keicho, Naoto;

Differential effects of a common splice site polymorphism on the generation of OAS1 variants in human bronchial epithelial cells

Abstract

The 2',5'-oligoadenylate synthetase 1 (OAS1) is one of the major interferon-inducible proteins and a critical component of the host defense system against viral infection. A single nucleotide polymorphism (SNP), rs10774671, presumably responsible for alternate splicing of this gene, has frequently been associated with a variety of viral diseases, including emerging respiratory infections. We investigated the SNP-dependent expression of OAS1 variants in primary cultured human bronchial epithelial cells. Total RNA was subjected to real-time RT-PCR with specific primer sets designed to amplify each transcript variant. We found that the p46 transcript was mainly expressed in cells with the GG genotype, whereas the p42 transcript was highly expressed, and the p44a (alternate exon in intron 5), p48, and p52 transcripts were expressed to a lesser extent, in cells with the AA genotype. Immunoblot analysis revealed that the p46 isoform and a smaller amount of the p42 isoform were present in cells with the GG genotype, whereas only the p42 isoform was clearly observed in cells with the AA genotype. Cellular DNA fragmentation induced by neutrophil elastase was more preferentially found in cells with the AA genotype. Thus, our findings provide insights into the potential role of OAS1 polymorphisms in respiratory infection.

Keywords

Genotype, Transcription, Genetic, Reverse Transcriptase Polymerase Chain Reaction, Immunoblotting, Bronchi, Epithelial Cells, Interferon-beta, Polymorphism, Single Nucleotide, Article, Gene Expression Regulation, Enzymologic, Isoenzymes, Alternative Splicing, 2',5'-Oligoadenylate Synthetase, Humans, RNA Splice Sites, Cells, Cultured

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
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    Average
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    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
18
Top 10%
Average
Average
Green
bronze