Allosteric communication in DNA polymerase clamp loaders relies on a critical hydrogen-bonded junction
Allosteric communication in DNA polymerase clamp loaders relies on a critical hydrogen-bonded junction
Clamp loaders are AAA+ ATPases that load sliding clamps onto DNA. We mapped the mutational sensitivity of the T4 bacteriophage sliding clamp and clamp loader by deep mutagenesis, and found that residues not involved in catalysis or binding display remarkable tolerance to mutation. An exception is a glutamine residue in the AAA+ module (Gln 118) that is not located at a catalytic or interfacial site. Gln 118 forms a hydrogen-bonded junction in a helical unit that we term the central coupler, because it connects the catalytic centers to DNA and the sliding clamp. A suppressor mutation indicates that hydrogen bonding in the junction is important, and molecular dynamics simulations reveal that it maintains rigidity in the central coupler. The glutamine-mediated junction is preserved in diverse AAA+ ATPases, suggesting that a connected network of hydrogen bonds that links ATP molecules is an essential aspect of allosteric communication in these proteins.
- University of California System United States
- University of California, Santa Cruz United States
- Catalent (United Kingdom) United Kingdom
- QB3 United States
- Catalent (United States) United States
DNA Replication, AAA+ proteins, allosteric communication, QH301-705.5, Protein Conformation, Science, Structural Biology and Molecular Biophysics, Glutamine, DNA-Directed DNA Polymerase, Molecular Dynamics Simulation, Virus Replication, Catalysis, Structure-Activity Relationship, Adenosine Triphosphate, Allosteric Regulation, Bacteriophage T4, Biology (General), replisome, Q, R, Hydrogen Bonding, Mutation, Medicine, ATPases Associated with Diverse Cellular Activities, bacteriophage T4
DNA Replication, AAA+ proteins, allosteric communication, QH301-705.5, Protein Conformation, Science, Structural Biology and Molecular Biophysics, Glutamine, DNA-Directed DNA Polymerase, Molecular Dynamics Simulation, Virus Replication, Catalysis, Structure-Activity Relationship, Adenosine Triphosphate, Allosteric Regulation, Bacteriophage T4, Biology (General), replisome, Q, R, Hydrogen Bonding, Mutation, Medicine, ATPases Associated with Diverse Cellular Activities, bacteriophage T4
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